Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2535 ATGTTTACTTCGATCCCATTGTTTGTTATCTTTTCAAGCCTTTGCCTGTTCTCTACTGTGATGGAAAATAAAGAAAATGAGGAAGAGGTAGTCATGGCTAATATTACTGAACCAACAAGTTACGTTGAAACAACTACAACCTCGAATGATCATGTTGAAGAAACCCTAATGAATTCTCAAAGCAATAGCTTTGAAAGAAACTTCAAAGAGTGTAGAAAGAATCACGCTTCCAGCATTGGAGGCTACGCTCTTGATGGTTGTGGCGAGTTTTTACCCGCTGGAATTGAAGGAACCATCGAATTTTTCACATGTGCTGCGTGTAACTGTCACCGAAATTTTCATCGGAGAGAAAATGGTGTTGTTAATGAAGAGAATATTTCCCTTCCTTTTAACAACCCCCGTTTTCCTCAGCCAACTCCCTTCTCGACAGTTTTTCAAACTCCGACCGGTTACCATCATGTGACTGGGACTTCTAGGGGGACAACTACTTCTCTTCCTTCTTCAGTTGTTCATGATGAGGCCCACTTTCCAAGGGGTTATCTTGGAGAAGGTGCTGTTGAGCCAATCTATCATGGTGATACTTATAGTGGTGGAGAAGGGTCGTCAAAATCAAAGAAGAGGTTCAGATCCAAGTTCACTCATGATCAAAAGGAAAGGATGCTTGGATTTGCTATGAAATCAGGTTGGAAGATTCATAAACAAGATGAAAATGTTGTTGAAGAATTTTGTAATGAGATTGGTGTAAAGTGTAAAACTTTTAGGGTGTGGATGTATAACAACAAACACACCCTTGGAAATAAGCACTAG 807 0.4002 MFTSIPLFVIFSSLCLFSTVMENKENEEEVVMANITEPTSYVETTTTSNDHVEETLMNSQSNSFERNFKECRKNHASSIGGYALDGCGEFLPAGIEGTIEFFTCAACNCHRNFHRRENGVVNEENISLPFNNPRFPQPTPFSTVFQTPTGYHHVTGTSRGTTTSLPSSVVHDEAHFPRGYLGEGAVEPIYHGDTYSGGEGSSKSKKRFRSKFTHDQKERMLGFAMKSGWKIHKQDENVVEEFCNEIGVKCKTFRVWMYNNKHTLGNKH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2535 268 SUPERFAMILY Homeodomain-like 191 264 IPR009057 -
Mtr2g2535 268 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 117 IPR006456 -
Mtr2g2535 268 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Mtr2g2535 268 Pfam ZF-HD protein dimerisation region 67 118 IPR006456 -
Mtr2g2535 268 Gene3D - 191 266 - -
Mtr2g2535 268 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 205 261 IPR006455 -
Mtr2g2535 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 26 264 - -
Mtr2g2535 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2535 Mtr-Chr2 38159544 38160476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2535 68 267 ZF-HD Transcription Factor Family AT2G02540 40.196 2.31e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr2g2535 ZF-HD_dimer 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2535 - - mtr:MTR_2g076780 482.256