Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2518 ATGGATGATGGTAGAGGTCCACCCAAAAGAATTAGAGGAAATCACCAATCTCCTAATACATTGGCAAGTTCTTCTATTTCTCCCCCTAACGAGGTTGCTATGGGGGGTAATGTAACATTGCCATCTCAAATTCATTTGCTCAATCAAGTAGAACAACTTGGTAATTCATGGAGTAGACCAGGTCGGTCTCTTATGGTGAATAATGAAAATAATCATTTAATTCCTGAAAACAATTTGGTGCAACACTTTCAACCAACACTTCATATACAAGCATCCCATACAAATGAAAGTTCATTAGAGAGTGGCAATGGGAATGTCTTAAGGTTTCATCATCATCGTCCCCTTGGTAATCAACAACACAATGTTAATCATCGCCCAACACTTCCTATGCATGGAGTTCAACCAAATCCTCCACTTGGTGGTGCAATCCCTCTACAACCAGGCCTTCATATTTTGGAATCTCGTGGTGTGATGTCTGAGAACACTCTCAGACATCAAAGTGTTCATCCCTTTGGATCGTCACAGGATGATGAAGATATTTCATTAAATGAGGAAATGGAAAATCTGCTTGATGATATTGCTTTCAACGATGAAGTGCAAAATTTACTTGATGGGATTTATTTAGATGATGAAGAAGAAAATCTGATTGATCCACATCTAGGAATGCGCTTGGAAATTGAGGGCATGTCCTATGAGGAGTTCATCGCATTGGGTGAGAGGATCGGTAATGTGAGTATTGGTTTATCAAAGGAAGCAATTACAACACAGCTGAAGACAAAAATTTACACACCATACCCTAATGGTATTAATTTGGAGGAGTTACCTTCTGACAACAAAGAAATTGATTCTTGCACAATATGTCAAACTGAATTTGAAGATCATGAGAAGATTGGAATCCTTCAATGTAAGCATGAATATCATGTCGAGTGCATACAAAATTGGACTATGGGAATGAATTCTCTCAATTTTCCACCTTATGTTTTATGA 987 0.381 MDDGRGPPKRIRGNHQSPNTLASSSISPPNEVAMGGNVTLPSQIHLLNQVEQLGNSWSRPGRSLMVNNENNHLIPENNLVQHFQPTLHIQASHTNESSLESGNGNVLRFHHHRPLGNQQHNVNHRPTLPMHGVQPNPPLGGAIPLQPGLHILESRGVMSENTLRHQSVHPFGSSQDDEDISLNEEMENLLDDIAFNDEVQNLLDGIYLDDEEENLIDPHLGMRLEIEGMSYEEFIALGERIGNVSIGLSKEAITTQLKTKIYTPYPNGINLEELPSDNKEIDSCTICQTEFEDHEKIGILQCKHEYHVECIQNWTMGMNSLNFPPYVL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2518 328 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 316 - -
Mtr2g2518 328 Pfam Ring finger domain 282 315 IPR001841 -
Mtr2g2518 328 ProSiteProfiles Zinc finger RING-type profile. 284 324 IPR001841 -
Mtr2g2518 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 316 IPR045191 GO:0061630
Mtr2g2518 328 MobiDBLite consensus disorder prediction 13 28 - -
Mtr2g2518 328 SUPERFAMILY RING/U-box 283 320 - -
Mtr2g2518 328 MobiDBLite consensus disorder prediction 1 28 - -
Mtr2g2518 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 321 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2518 Mtr-Chr2 37967322 37969605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2518 217 316 C3H Transcription Factor Family AT2G15530 43.564 1.07e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2518 - K19041 mtr:MTR_2g076240 209.92