Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2517 ATGGATTCTGGTAGAGGTCCACCCAAAAGGATTAGAGGAAATCACCAATCTCCTAGTACATTGGCAAGTTCTTTTAATGGGATTGCTATGAGGGATAATGCAACATTGTTATCTCAAATTCACTTGCTCGATCAAGTAGGACAACTTGGTAATTCATGGAGAAGGCCCGGTCAATCAATTATGGTGAATAACGGTAATAGCCATTTAGTTCCTGAAAACAATTTGGTGCAACACTTTTGGCCAACGCCTCATATACAAGGTTTGGTTATGGGTTTGGGGTGGGATGGCGTTGCTTTAAATGAGGGAGTGCAAAACCGTCTTGACGGTGTTGCTTTAAATGATCAAATGCAAAATCTTCTTGACATTATTGATTTAGATTATGATGAAGTGGAAATTCTGCTTGATCAACATCAAGACATGCGCCTGGACATGAACAACATGTCTTATGAGGAGTTTATTGCATTGGGTGAGAGGATCGGTAGTGTGAGTACTGGTTTACATGAGGAAAGAATTACGGATCAACTAGAGACAAGAGTCTACATCCCATACCCTAATTGTACTAATTTGGAGGAGTTACCTTTTAACGACAAAGAAATTGTTGTTTGCACAATATGTCAAACTGAATTTGAAGACCAGGAGAAGATTGGAATCCTTCAATGTAAGCATTAA 669 0.3916 MDSGRGPPKRIRGNHQSPSTLASSFNGIAMRDNATLLSQIHLLDQVGQLGNSWRRPGQSIMVNNGNSHLVPENNLVQHFWPTPHIQGLVMGLGWDGVALNEGVQNRLDGVALNDQMQNLLDIIDLDYDEVEILLDQHQDMRLDMNNMSYEEFIALGERIGSVSTGLHEERITDQLETRVYIPYPNCTNLEELPFNDKEIVVCTICQTEFEDQEKIGILQCKH* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2517 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 106 222 IPR045191 GO:0061630
Mtr2g2517 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 87 IPR045191 GO:0061630
Mtr2g2517 222 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 106 222 - -
Mtr2g2517 222 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2517 Mtr-Chr2 37956957 37959571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2517 67 205 C3H Transcription Factor Family AT2G37150 35.211 2.95e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2517 - K19041 mtr:MTR_2g076240 229.565