Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2514 ATGAAGCTCTTTCGATCTCTTAAATTATTCAGATACTTCAGCAATGTTAAGGCTCTCAATGCTACCAACGATGACACCGTTGGTAGTGAATCAGAGGACAAAACTGATTGGTCTACCATGCTTCCAGAAGTTCTTGCGGATATCATTAAACGAGTTGATGTCATCGGAGAACAATGGCCGCATCGTCGAAACGTCGTCGCTTGCGCCTGCGTTTGCAAACGGTGGAGAGATATCACACGTGAGGTCGTAGGGTCACCTTCTCTTAACGGCAAAATAACTTTCCCTTCTTGTCTTAAACAGCCAGGGCCACGCGACCTTCCCCACCACTGTGTTGTAAATTGGAATAAGAAGACCTCCACATTTTACCTCTATCTTGCCCTTACTCCATCATTAACAGATAACGGGAAGTTCCTATTAGCAGCTAGAAGATATCGGTTTGTTACGCATACTGAGTATGTTATATCGCTCGATGCCAATGACTTTTCACAAGGAAGTAATGCTTATGTTGGCAAGCTAAGTTCAGATTTTCTTGAAGCAAACTTCACAATTTATGACGCCTCGGCTGGTGCCAAACCATCAAGTGACAGAACAAGCCGGCGTTTTGCAAGCAAACAGATAAGCCCTCAATTTCCTGCTGGTAACGTCGAGGCAGGGAACATCTCCTACAAAAAATTCAGCCTTTTGAAACCTAAACGACCACGACGAATGATTTGCTCTCTGAAGTCTCCTGTGTCATCAATATGCGAAAGTTCAGACAGCAAGTCTTTCGACAACCATACGATGCACTGTAAAGAACAAGCTACTTCTTCTGCCTACACAATCTTGAAGAACAAAGCTCCAATGTGGAACGAGCAATTGGAGTGCTGGTTCTTGAACTTCCATGAGAGAAAGGATATGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACAGTTCTTCTCCAGTTTTGTAAAGTAGGAGGTGATACTTTCACCATGTACTATAGACAGCCCTTATCCGCCTTCCATGCGTTCGCCATTTGCTTAACTAGCTTCGGCACCAAACTGGCTTGTCAGTAA 1104 0.4438 MKLFRSLKLFRYFSNVKALNATNDDTVGSESEDKTDWSTMLPEVLADIIKRVDVIGEQWPHRRNVVACACVCKRWRDITREVVGSPSLNGKITFPSCLKQPGPRDLPHHCVVNWNKKTSTFYLYLALTPSLTDNGKFLLAARRYRFVTHTEYVISLDANDFSQGSNAYVGKLSSDFLEANFTIYDASAGAKPSSDRTSRRFASKQISPQFPAGNVEAGNISYKKFSLLKPKRPRRMICSLKSPVSSICESSDSKSFDNHTMHCKEQATSSAYTILKNKAPMWNEQLECWFLNFHERKDMTVASVKNFQLVATVDQSQPGGKGDEETVLLQFCKVGGDTFTMYYRQPLSAFHAFAICLTSFGTKLACQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2514 367 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Mtr2g2514 367 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Mtr2g2514 367 PRINTS Tubby superfamily signature 275 292 IPR000007 -
Mtr2g2514 367 PRINTS Tubby superfamily signature 324 343 IPR000007 -
Mtr2g2514 367 PRINTS Tubby superfamily signature 345 367 IPR000007 -
Mtr2g2514 367 Pfam Tub family 98 362 IPR000007 -
Mtr2g2514 367 Gene3D - 29 88 - -
Mtr2g2514 367 Pfam F-box domain 42 81 IPR001810 GO:0005515
Mtr2g2514 367 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 22 367 - -
Mtr2g2514 367 Gene3D Tubby Protein; Chain A 93 367 IPR025659 -
Mtr2g2514 367 SUPERFAMILY Tubby C-terminal domain-like 86 367 IPR025659 -
Mtr2g2514 367 PANTHER TUBBY-RELATED 22 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2514 Mtr-Chr2 37945271 37947310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2514 1 367 TUB Transcription Factor Family AT1G53320 61.979 1.54e-156 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr2g2514 Tub 3.5e-79 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2514 K19600 - gmx:100808096 506.908