Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2513 ATGTCGTTAATGAAGGTATTTCGATCTCGTAAATACTCAAAATCCTTCAAGGAGGTTCAATCTATCGACACCGTCGCCGATGACCGGAGAGACGCCGGCGGTGAATCGGCGGATGGAACTGATTGGTCTACGATGCTACCGGATCTCCTTGCAGAGATAATTAAACGAGTCGACGTTGCCGAGGAACAGTGGCCGCACCGTCAAAACGTCGTCGCTTGTGCCTGCGTGTGTAAACGGTGGAGAGATATTACACGTGAGATCGTTAAGTCACCTCAACGTAACGGCACAATCACCTTTCCTTCTTGTCTTAAACAGCCAGGACCACGTGATCTTCCCCATCATTGTCTTATAAAGCGGAGTAAGAAGACTTCCACATTTTACCTCTATCTTGCCCTTACATCATCATTCTCAGATAAAGGGAAATTTCTATTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAGTATGCTATATCGCTTGATGCTGATGACTTATCACAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGACTTTCTTGGCACCAACTTCACAATTTACGACAGCCAGCCGCCCCATAATGGTGCCAAACCATCATGTGCAAGAGCTAGCCGACGTTTTGCCAGCAAACAGATAAGTCCTCAAGTTCCTGCTGGTAACTTCGAGGCAGGGGATGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGATGTGCTCACTGAAGTTTCCTGTCCCATCAGTGGGTGAAAGTTCAGATAGCAAGTCTTTTGATGGTCAAAAGATGCACAGTAAAGAACATGCTGCTTCTGCGCACACAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCTGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCGGGAGGGAAAGGAGATGAAGAAACGGTTCTCCTCCAGTTTGGTAAAGTAGGGGACGATACCTTCACCATGGACTATAGGCAGCCCTTGTCCGCCTTCCAGGCGTTTGCCATTTGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1116 0.4749 MSLMKVFRSRKYSKSFKEVQSIDTVADDRRDAGGESADGTDWSTMLPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPQRNGTITFPSCLKQPGPRDLPHHCLIKRSKKTSTFYLYLALTSSFSDKGKFLLAARRYRCGTHTEYAISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSCARASRRFASKQISPQVPAGNFEAGDVSYKFNLLKSRGPRRMMCSLKFPVPSVGESSDSKSFDGQKMHSKEHAASAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2513 371 PANTHER TUBBY-RELATED 12 371 - -
Mtr2g2513 371 Pfam Tub family 103 366 IPR000007 -
Mtr2g2513 371 Pfam F-box domain 47 88 IPR001810 GO:0005515
Mtr2g2513 371 ProSitePatterns Tub family signature 1. 299 312 IPR018066 -
Mtr2g2513 371 Gene3D Tubby Protein; Chain A 98 371 IPR025659 -
Mtr2g2513 371 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 12 371 - -
Mtr2g2513 371 SUPERFAMILY Tubby C-terminal domain-like 93 371 IPR025659 -
Mtr2g2513 371 ProSitePatterns Tub family signature 2. 356 371 IPR018066 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 281 298 IPR000007 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 299 315 IPR000007 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 328 347 IPR000007 -
Mtr2g2513 371 PRINTS Tubby superfamily signature 349 371 IPR000007 -
Mtr2g2513 371 SUPERFAMILY F-box domain 40 85 IPR036047 GO:0005515
Mtr2g2513 371 Gene3D - 35 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2513 Mtr-Chr2 37938957 37943795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2513 1 371 TUB Transcription Factor Family AT1G53320 71.240 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr2g2513 Tub 5.4e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2513 K19600 - gmx:100808096 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2513 2 37938957 37943795 Mtr2g2513 2 37938957 37943795 ECH