Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2510 ATGAACACAAACTTGAAAGGCTATAATCACACTTATTACAACAATCCAATCATCACCAACAAAAGTGATAATAATAATGGATCATCATCAGAAGATTACATGATGAATGGTTGTTATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAGTTTAAATCAGCTCAAGCACTTGGAGGTCACATGAATGTTCATAGAAGGGATAGAGCAAGGCTTAGACAATCATCACCACCAACAACTCATGAACCAGCTCAACTTAATGAAGGTTCTTCTATGCTTAATCTTAACCTTAATAACCCTACTATCACTACTACTAACCCTAATTTATTCTCACATTCATCTTCATCTTCTTCATCATTATCATCCTCTTCAGCAACATCTCTCAAGCCTATTACTTGCACATTACCTTTGTTTGTTTCACCTCCTTCTGAGTTTAATAGATATGTTGTTGTGGATGGTATTTTGTTGAACCCTACTTTGACCACAAAGACCTCAGAAAAATCAAAGATGGATGGTTTTGAATGTGAAGATGATTGTGGAATGGTGAAGAAAAGTGAGATTTTAAGGATGGATTTGGAGATAGGTTTGCCAGGAGATTATGATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTACTCTAATTAG 660 0.3591 MNTNLKGYNHTYYNNPIITNKSDNNNGSSSEDYMMNGCYPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTTHEPAQLNEGSSMLNLNLNNPTITTTNPNLFSHSSSSSSSLSSSSATSLKPITCTLPLFVSPPSEFNRYVVVDGILLNPTLTTKTSEKSKMDGFECEDDCGMVKKSEILRMDLEIGLPGDYDNLDLELRLGTTTYSN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2510 219 SMART c2h2final6 46 68 IPR013087 -
Mtr2g2510 219 Pfam C2H2-type zinc finger 46 70 - -
Mtr2g2510 219 Gene3D Classic Zinc Finger 43 95 - -
Mtr2g2510 219 PANTHER OS07G0101800 PROTEIN 1 217 - -
Mtr2g2510 219 MobiDBLite consensus disorder prediction 79 127 - -
Mtr2g2510 219 MobiDBLite consensus disorder prediction 63 127 - -
Mtr2g2510 219 SUPERFAMILY beta-beta-alpha zinc fingers 43 72 IPR036236 -
Mtr2g2510 219 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 217 - -
Mtr2g2510 219 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Mtr2g2510 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2510 Mtr-Chr2 37860457 37861116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2510 23 213 C2H2 Transcription Factor Family AT3G23130 36.869 1.06e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g2510 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2510 - - var:108333719 189.504