Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2340 ATGACCTGTTTTCCTTGCTTATTTAGCAAGACATCGTCTTCTTCAAGACAAAATCCAGACAATGATGAAGGCATTCACAATGTTAAAATCTATACCTACAAAGAACTAAGTAATGCCACTGATAACTTTAGTCTTGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACATGGGACGACTGAAAAATGGAAAACTTGCTGCTATAAAAGTTCTTTCAGCGGAATCAAAACAAGGGGTGAAGGAGTTCTTGACAGAGATTAACGTGATCTCCGAAGTAGAGCATGAAAATTTGGTTAAGTTATATGGTTGTTGTGTTGAAAAAAATAACAGGATATTAGTCTACAATTACCTTGAGAATAATAGCCTTTCACAAACTCTTCTAGGCGGAGGTCACAGTAGTATCTACTTTGATTGGCGAACGCGATGTAGAATATGTGTTGGCATTGCACGCGGGCTTGCCTTTCTACACGAAGAAGTTAGGCCTCCTATCATTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCCAAGATTTCCGACTTTGGTCTTGCAAAGCTTATGCCTGCAAACGCGACTCATGTCAGCACACGTGTAGCAGGAACATTAGGTTATTTGGCACCGGAGTATGCAATAGGGGGAAGGCTTACACGAAAAGCAGACATTTACAGTTTCGGTGTCCTCCTTGTAGAAATAGTCAGTGGAAGACGTAACACAAATTCGCGACTGCCAACGGAAGAACAATTCATTCTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAATTAGTTGGACTGATAGATACATCACTAAACGGGGAATTCGATGCCGAGCAGGCCTGCAAGTTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCTCCAAAGCGCCGGCCATCCATGTCTTCTGTGGTAAAGATGCTTACCGGAGAAATGGAAGTTGACGACAGTATGATGACAAAACCTGCCTTAATTTCTGATCTTATGGACCTCAAAGTTAAACATAAACAAGAAAGTATAATTGATATGAAGACTTCCTACAATACATCCTCTGCCTCAGAGCATGAGGACACTACAATTACATCAGCAGCAACTACAACCTTTTACAATGCTTTATCTTTAAATTAA 1146 0.4058 MTCFPCLFSKTSSSSRQNPDNDEGIHNVKIYTYKELSNATDNFSLANKIGEGGFGSVYMGRLKNGKLAAIKVLSAESKQGVKEFLTEINVISEVEHENLVKLYGCCVEKNNRILVYNYLENNSLSQTLLGGGHSSIYFDWRTRCRICVGIARGLAFLHEEVRPPIIHRDIKASNILLDKDLTPKISDFGLAKLMPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRRNTNSRLPTEEQFILERTWELYERKELVGLIDTSLNGEFDAEQACKFLKIGLLCTQESPKRRPSMSSVVKMLTGEMEVDDSMMTKPALISDLMDLKVKHKQESIIDMKTSYNTSSASEHEDTTITSAATTTFYNALSLN* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2340 381 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 371 - -
Mtr2g2340 381 SUPERFAMILY Protein kinase-like (PK-like) 20 314 IPR011009 -
Mtr2g2340 381 PANTHER RECEPTOR-LIKE KINASE 2 371 - -
Mtr2g2340 381 Gene3D Transferase(Phosphotransferase) domain 1 119 329 - -
Mtr2g2340 381 Pfam Protein kinase domain 45 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g2340 381 PIRSF TyrPK_CSF1-R 39 125 - -
Mtr2g2340 381 PIRSF TyrPK_CSF1-R 132 258 - -
Mtr2g2340 381 PIRSF TyrPK_CSF1-R 284 377 - -
Mtr2g2340 381 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Mtr2g2340 381 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Mtr2g2340 381 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr2g2340 381 CDD STKc_IRAK 49 316 - -
Mtr2g2340 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Mtr2g2340 381 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2340 Mtr-Chr2 35388677 35391193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2340 16 333 Receptor kinase-like Gene Family AT1G56120 52.632 8.94e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr2g2340 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2340 - - gmx:100816707 625.55