Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2254 ATGGGAGCACTTAGCACATACTTCAATTATAATTGTTACCCTTATCAACCTACTCAAACTACCAATAACAACTCAGAAATCACCACTTTTCAACATCATGAACAAGAACAAAACCACTATTTCAATGAAGCTTCTCTTTTAGATGAAAGCTTCATTTTTCAAACTTACCCTTGTCAAGATCAACAACTACTTGTTGACTCCACTTTTTCTTCTCAAAATGATGACTTTGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCATTTTCAACAACTACCAGCTTCCATGTCCAAAACGCCAAAAGCTGATATACTATGAGGAGGAGAAAAGAGAAGAGCCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTATGGATGAGTTTGTGACTAACCCTAACCCTAACCCTTTTGCTTCCTTTGAGGCAGAAGTAGAACCACCTTTTGCTGCTACTTCAAAAATTGAGAAGAAGGTTACCGAAAGGACTATCTCGTCGCAGAGTATCGCGGCTCGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGAACTACACAAACTAGTTGTTTCTCCATTTGTTCAAGAGAAATTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTTACCACATTGAGCAATCATGATGATGTTCAATCAAAACCTACCATCCTTAAGGGTCTGAAACAGCTTGTTGGAACTGAGATTGAGAAGAAATCAGACCAAGAATAG 897 0.3802 MGALSTYFNYNCYPYQPTQTTNNNSEITTFQHHEQEQNHYFNEASLLDESFIFQTYPCQDQQLLVDSTFSSQNDDFVSMNEIFPNEEDFIFNNYQLPCPKRQKLIYYEEEKREEPQQELLNSTNFFMDEFVTNPNPNPFASFEAEVEPPFAATSKIEKKVTERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLMETFSKEEKEPPPSEELHKLVVSPFVQEKLYSEEKCFVPKEFVTTLSNHDDVQSKPTILKGLKQLVGTEIEKKSDQE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2254 298 Gene3D - 161 231 IPR036638 GO:0046983
Mtr2g2254 298 SMART finulus 169 218 IPR011598 GO:0046983
Mtr2g2254 298 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 284 - -
Mtr2g2254 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Mtr2g2254 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983
Mtr2g2254 298 Pfam Helix-loop-helix DNA-binding domain 169 213 IPR011598 GO:0046983
Mtr2g2254 298 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 2 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2254 Mtr-Chr2 34006278 34007414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2254 49 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 37.594 1.20e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g2254 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2254 - - mtr:MTR_1g060700 457.988