Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2246 ATGGTTGTTTCACGCAGACTAGTATCCTCTCTGATTCGATTATGGAAACCCTCCGTTTCTTGCTCAACATTAATACGCTCTTCTACATCCTGTGCTTCTCGCCATACCTACGGCGGTATTTCCCAATATGCTTCGTCTGCTTCAACTCCATTGTCACGTCAGGCGAAGATAGAAGTACCCGGAGGTCCTCAAATCAGTGATGAGTTCACCGGTCAGGATGCAATCGGTCATGTTTGCCAAGTTGTCGATACTTTAGTGGATGTAAAATTCAAGGAAGGTTTGCCTCTGCCCCAGATACGGACTGCCCTCGAGGTTTTGGATCATTCTTCTCGATTGGTCTTGGAGGTTGCAGATCATTTGGGTGAGGGCGTGGTGCGAACAATTGCTATGAGTCCAACTGAAGGAGTTGCTAGAGGGTGGCGAGTGCTCAACACCGGCTCCCCTATCACTGTTCCTGTTGGTAGGGTTACCCTTGGCCGTGTTATGAATGTTATTGGGGAAACCATTGATGACTATGGTGAATTGAAAGCGGAGAAAATGTTACCAATATATAGAAAAGCTCCTTCCTTTTACGAACGTAATAAGACTCCGGTCATACTTCAAACCGGCATTAAGGTTATTGACATGCTTGCACCATACCAAAGAGGAGGAAATATTGGGTTGATTGGTTGCGCTGGGGTAGGCAAAAGTATACTTATGATGGAACTGATGAATATTGTTGCTGACATTTATGGTGGTTTGTCTGTTTTTGCCGGAATTAAAGAACAATCCCAAGAGGGTGAGGACTTGTACAGAAGAATGGTTAGCGATGGTATCATTAAGCTAGGTGATAAGCAGAGTCAAAGCAAATGTGCGTTTGTGTGTGGTCAAATAAATGACCCCCCTGGTGCTCGTAGCCGTGTTGTTTATACTGGACTTACAGTTGCGGAAGGTTTCCGTGATGAAGGACGAAAAGTGCTTCTTTTTGTTGACAACCATTTCAGATTTACTCAAGCTGATTCGGAGTTATCTACTTTGCTTGGTCGTATCCCATCGGCTGTTGGTTATCAACCAACACTGTCCATTGATATCCATAGTCTTCAAGAACGTATCGCAGCCACATCTAAGAGTTTTATTACCTCTTTCCATACTATCTATCCTGGTGATGACGTTGATGTTCACTTGGATGCTGCAACCGTCTTCTCAAAAGAGATCTTTGATCGTGGAATCTATCCGGCTATTGACCCTTTGAAATCAACATCTAGTTTACTATCTCCACACTGTCTGCATGAAGATCACTTTGAAGTTGCTGATGGTGTAATACGAAATCTCCAACACTACAAGAATCTTCAAGATATCATTGCTATTTTAGGAGTGGATGAGCTTAGTGAAGATGATCAACTGATTATTACTCGTGCTCGTAAAATTGAGCTATTTTTAGGTCAGCCTTTGTCTGTGGTAGCCTATCCTAGATCTCAGGAAACATATGTTCATTTGGATGATACCCTTAAGGGTTTCCAGGGTTTGTTGGATGGCGAATACGATTACATTCCTGATGCCTATTTTCACATGACTTGTGGCATTAAAGATGTCATTGCAGCGTATGAAAACCATCTCTTGGCTGGAATGCAATGCAACTAA 1620 0.4302 MVVSRRLVSSLIRLWKPSVSCSTLIRSSTSCASRHTYGGISQYASSASTPLSRQAKIEVPGGPQISDEFTGQDAIGHVCQVVDTLVDVKFKEGLPLPQIRTALEVLDHSSRLVLEVADHLGEGVVRTIAMSPTEGVARGWRVLNTGSPITVPVGRVTLGRVMNVIGETIDDYGELKAEKMLPIYRKAPSFYERNKTPVILQTGIKVIDMLAPYQRGGNIGLIGCAGVGKSILMMELMNIVADIYGGLSVFAGIKEQSQEGEDLYRRMVSDGIIKLGDKQSQSKCAFVCGQINDPPGARSRVVYTGLTVAEGFRDEGRKVLLFVDNHFRFTQADSELSTLLGRIPSAVGYQPTLSIDIHSLQERIAATSKSFITSFHTIYPGDDVDVHLDAATVFSKEIFDRGIYPAIDPLKSTSSLLSPHCLHEDHFEVADGVIRNLQHYKNLQDIIAILGVDELSEDDQLIITRARKIELFLGQPLSVVAYPRSQETYVHLDDTLKGFQGLLDGEYDYIPDAYFHMTCGIKDVIAAYENHLLAGMQCN* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2246 539 Gene3D - 149 416 IPR027417 -
Mtr2g2246 539 Gene3D - 64 148 - -
Mtr2g2246 539 TIGRFAM atpD: ATP synthase F1, beta subunit 75 526 IPR005722 GO:0015986|GO:0045261|GO:0046933
Mtr2g2246 539 CDD ATP-synt_F1_beta_N 74 149 - -
Mtr2g2246 539 Pfam ATP synthase alpha/beta family, beta-barrel domain 78 146 IPR004100 GO:0046034|GO:1902600
Mtr2g2246 539 Gene3D - 417 533 IPR024034 -
Mtr2g2246 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 419 IPR027417 -
Mtr2g2246 539 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 417 530 - -
Mtr2g2246 539 PANTHER ATP SYNTHASE SUBUNIT BETA-1, MITOCHONDRIAL-RELATED 5 530 - -
Mtr2g2246 539 PANTHER ATP SYNTHASE 5 530 - -
Mtr2g2246 539 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 72 148 IPR036121 GO:0046034|GO:1902600
Mtr2g2246 539 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 203 414 IPR000194 GO:0005524
Mtr2g2246 539 ProSitePatterns ATP synthase alpha and beta subunits signature. 405 414 IPR020003 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2246 Mtr-Chr2 33923892 33928010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2246 200 475 Primary Pumps ATPases(2) AT1G78900 25.581 3.04e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2246 K02133 - gmx:100789705 610.912