Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2233 ATGGATAATTCGGATCAGACTCAACAGCAGCAACAATCTGCGATCGGAGTCGCACCAGGTACTAGCCAAATGGTCTATTCTTCTCACTACCAGACTGTTCCCATGTTGGCTTCTGGCACACCTGCTGTAGCTGTTCCTACCCCAACACAGCCTCCAGCCGCCTTCTCTAATTCCGCCCACCAATTCGCATACCAGCAAGCACAGCATTTCCACCATCAACAGCAGCAACATCAACATCAGCAGCTTCAAATGTTCTGGGCAAACCAAATGCAAGAAATCGAGCAAACATTTGACTTTAAAAACCATACTCTCCCACTTGCGCGTATAAAGAAAATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCAGTCGTATTTGCAAAAGCATGCGAAATGTTTATCTTAGAGCTGACTTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACACTACAAAAGAATGATGTAGCAGCAGCTATTGCAAGAAATGATGTTTTTGATTTCTTGGTTGATATAATTCCAAGAGATGAATTCAAAGAAGATGGGCTTGGAATGGCAAAGGCTACTACTCCGATAATCGGTGCTCCAGCTGATATGCCATATTATTATGTCCCGCCACAACATCCTTTAGGTCCTACAGGGATGATCATGGGAAACCCAGTTGATCATGCAGCCCTATATTCTAACCAGCAGCCTCGACCTCCTGTGGCTTTCATGCCGTGGTCAAATGCACACATTCAGCAACAGCAGCCACCACAACAGCAACAAACAGACTCTTAA 798 0.4499 MDNSDQTQQQQQSAIGVAPGTSQMVYSSHYQTVPMLASGTPAVAVPTPTQPPAAFSNSAHQFAYQQAQHFHHQQQQHQHQQLQMFWANQMQEIEQTFDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDVAAAIARNDVFDFLVDIIPRDEFKEDGLGMAKATTPIIGAPADMPYYYVPPQHPLGPTGMIMGNPVDHAALYSNQQPRPPVAFMPWSNAHIQQQQPPQQQQTDS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2233 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 258 - -
Mtr2g2233 265 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Mtr2g2233 265 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 5 258 - -
Mtr2g2233 265 SUPERFAMILY Histone-fold 58 175 IPR009072 GO:0046982
Mtr2g2233 265 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2233 Mtr-Chr2 33764810 33766861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2233 82 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 83.846 8.16e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr2g2233 CBFD_NFYB_HMF 5.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2233 K08066 - gmx:100799981 364.77