Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr2g2200 | ATGTCAGAAACACTACGGTTTGGTGATGGTGTTACAAGAGAGAACAAAAAACTAAAGCGCAAGATGGATGATGCTAACATTGATGCTGATTCAGATGTGTTACTATCTCTGAGTGTAGGAGGAGGTGGAAGTGGAAGATCTTCATTCAAACCCCTCAAGAGTCATGAGGAGCAAAGGGAATATCCATGTAAGTTTTGCAACAAGAAGTTTCCAAGTTCTCAAGCCTTGGGAGGACACCAAAATGCCCATAGGCGAGAAAGGGTGCTTTCAAGAATTGAAAAGGAAATTCAATTAAGAACTTTTGGACTTGGTGTTCATCACTTTTTTCCATACTCAAATCATCATCAATATCCATTCATTGTCGCAGGGTCATCACCTCTTTATCATGGAGTTGGATGGCCTCAATTTGTTTCACCTGCAATCTATGGCAACTCAATTGGGATGATCATTAACTCTGCTTGGCCTACTCAAACTCCATTGAATAATAATGTGGGATTTGAAAATTATCAACATAATGATCACCTGCAGGTTCCTTCGTTTAATGTTGCTCTTAACAGTCATGTCGTAATGGTAAATAACAATCATTACGAGCCTAATGACAACCAAAATTCATCCTCATTTCCTGATTCATCCTTCAAGCTTTAG | 645 | 0.3907 | MSETLRFGDGVTRENKKLKRKMDDANIDADSDVLLSLSVGGGGSGRSSFKPLKSHEEQREYPCKFCNKKFPSSQALGGHQNAHRRERVLSRIEKEIQLRTFGLGVHHFFPYSNHHQYPFIVAGSSPLYHGVGWPQFVSPAIYGNSIGMIINSAWPTQTPLNNNVGFENYQHNDHLQVPSFNVALNSHVVMVNNNHYEPNDNQNSSSFPDSSFKL* | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr2g2200 | 214 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 88 | IPR013087 | - | |
Mtr2g2200 | 214 | MobiDBLite | consensus disorder prediction | 193 | 214 | - | - | |
Mtr2g2200 | 214 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Mtr2g2200 | 214 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 207 | - | - | |
Mtr2g2200 | 214 | Gene3D | Classic Zinc Finger | 46 | 101 | - | - | |
Mtr2g2200 | 214 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 88 | IPR036236 | - | |
Mtr2g2200 | 214 | Pfam | C2H2-type zinc finger | 61 | 86 | - | - | |
Mtr2g2200 | 214 | PANTHER | ZINC FINGER PROTEIN JAGGED | 1 | 207 | IPR045320 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr2g2200 | Mtr-Chr2 | 33014517 | 33015161 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr2g2200 | 50 | 151 | C2H2 Transcription Factor Family | AT1G24625 | 35.514 | 4.93e-13 | 63.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Mtr2g2200 | zf-C2H2_6 | 3.3e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr2g2200 | - | - | mtr:MTR_2g067740 | 430.254 |