Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2200 ATGTCAGAAACACTACGGTTTGGTGATGGTGTTACAAGAGAGAACAAAAAACTAAAGCGCAAGATGGATGATGCTAACATTGATGCTGATTCAGATGTGTTACTATCTCTGAGTGTAGGAGGAGGTGGAAGTGGAAGATCTTCATTCAAACCCCTCAAGAGTCATGAGGAGCAAAGGGAATATCCATGTAAGTTTTGCAACAAGAAGTTTCCAAGTTCTCAAGCCTTGGGAGGACACCAAAATGCCCATAGGCGAGAAAGGGTGCTTTCAAGAATTGAAAAGGAAATTCAATTAAGAACTTTTGGACTTGGTGTTCATCACTTTTTTCCATACTCAAATCATCATCAATATCCATTCATTGTCGCAGGGTCATCACCTCTTTATCATGGAGTTGGATGGCCTCAATTTGTTTCACCTGCAATCTATGGCAACTCAATTGGGATGATCATTAACTCTGCTTGGCCTACTCAAACTCCATTGAATAATAATGTGGGATTTGAAAATTATCAACATAATGATCACCTGCAGGTTCCTTCGTTTAATGTTGCTCTTAACAGTCATGTCGTAATGGTAAATAACAATCATTACGAGCCTAATGACAACCAAAATTCATCCTCATTTCCTGATTCATCCTTCAAGCTTTAG 645 0.3907 MSETLRFGDGVTRENKKLKRKMDDANIDADSDVLLSLSVGGGGSGRSSFKPLKSHEEQREYPCKFCNKKFPSSQALGGHQNAHRRERVLSRIEKEIQLRTFGLGVHHFFPYSNHHQYPFIVAGSSPLYHGVGWPQFVSPAIYGNSIGMIINSAWPTQTPLNNNVGFENYQHNDHLQVPSFNVALNSHVVMVNNNHYEPNDNQNSSSFPDSSFKL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2200 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Mtr2g2200 214 MobiDBLite consensus disorder prediction 193 214 - -
Mtr2g2200 214 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mtr2g2200 214 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 207 - -
Mtr2g2200 214 Gene3D Classic Zinc Finger 46 101 - -
Mtr2g2200 214 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
Mtr2g2200 214 Pfam C2H2-type zinc finger 61 86 - -
Mtr2g2200 214 PANTHER ZINC FINGER PROTEIN JAGGED 1 207 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2200 Mtr-Chr2 33014517 33015161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2200 50 151 C2H2 Transcription Factor Family AT1G24625 35.514 4.93e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr2g2200 zf-C2H2_6 3.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2200 - - mtr:MTR_2g067740 430.254