Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2188 ATGGGCCATCATTGTTGCAGCAAGCAGAAGATCAAAAGAGGATTATGGTCTCCTGAAGAAGATGATAAGCTTATTACATATATTACTACTCATGGACATAAAAGCTGGAGTTCTGTTCCAAAATTTGCAGGCCTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGACAAACTATTTGAGACCAGATCTAAAAAGAGGCTCCTTCACTGCTGAAGAAGAACAGATCATAATTGACATACATAGAATTCTTGGAAACAGATGGGCCCAAATAGCAAAGCACCTTCCTGGTAGAACTGATAATGAAGTGAAGAATTTTTGGAACTCTTGCATTAAAAAGAAGCTTATTTCTCAAGGCTTAGATCCACAAACTCACAATTTACTTTCTTCTTCTCATCCTAAGAGAAACAACTCAAATTATAAAAGTTCCAATTCCATTTTCATTCTTAGTTCACAAATGCCACCAAATACTAATTATCTCATTGAAACAACAAATCAAACCTTTCCTTCACTACCTAAACCTCTACAAAATAATATTCTTCAAACTCCTACAAGTGTTTCCCCTAACCAATATCAAGCATCTTTCAATGTAATTTCAAATCAACTCAGTGTTCCCGAGCATGAACTGCCTCGAATATTAACTGAGAACATATCAAACATTTGTTCTACTTCCTGCAATGAGAATAGCATATGGGTTTCAAGAGTTGATGATTGTAGAGGTTCAATGTTAGAAGAAGGAACACAAGCTCATGTGGAGCAAGAAAAGGAGAAGATTTGTGAGAAGGGAATGGATGAAAAAGAAGTTAATGAGAAAGAAGATATTGAAATGAATGGTTGTTTTGAGAATTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTAACTCTGAGTTTATATCTCATGATCTAGACTATATGGATCAACTTGCATGGAACTTTTAA 942 0.3524 MGHHCCSKQKIKRGLWSPEEDDKLITYITTHGHKSWSSVPKFAGLQRCGKSCRLRWTNYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSSHPKRNNSNYKSSNSIFILSSQMPPNTNYLIETTNQTFPSLPKPLQNNILQTPTSVSPNQYQASFNVISNQLSVPEHELPRILTENISNICSTSCNENSIWVSRVDDCRGSMLEEGTQAHVEQEKEKICEKGMDEKEVNEKEDIEMNGCFENSNFDFGLLESVLNSEFISHDLDYMDQLAWNF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2188 313 PANTHER MYB DOMAIN PROTEIN 55 1 301 - -
Mtr2g2188 313 CDD SANT 68 108 IPR001005 -
Mtr2g2188 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Mtr2g2188 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Mtr2g2188 313 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mtr2g2188 313 Gene3D - 10 66 - -
Mtr2g2188 313 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Mtr2g2188 313 PANTHER BNAC05G40480D PROTEIN 1 301 - -
Mtr2g2188 313 CDD SANT 16 60 IPR001005 -
Mtr2g2188 313 SMART sant 12 62 IPR001005 -
Mtr2g2188 313 SMART sant 65 113 IPR001005 -
Mtr2g2188 313 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mtr2g2188 313 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Mtr2g2188 313 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Mtr2g2188 313 Gene3D - 67 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2188 Mtr-Chr2 32722751 32724835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2188 1 195 MYB Transcription Factor Family AT3G12720 58.525 1.10e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr2g2188 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2188 K09422 - gmx:100791209 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2188 2 32722751 32724835 Mtr2g2188 2 32722751 32724835 ECH