Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2166 ATGGAAGTTTCAAAAAATAAAGCAAAGTTTCTTGTACTTGTTGGAGAATCATTTCCTATGAGAAGGGCTTTGTTGAATTCTAGATTTGCTTGGTTTCATAGTAGTGTGAAATGTTTGAACAAACATGATTCTTTGACCCTTTCAAGCGTTGGTTTTGAAAGTGAAATTGAGCCAAAGATTACAAGTGAAGAAAACAAGGTTAAGCCGTTAGGTTTATCTTCTTCTGAGGGTTTCAAGGTGAAAAGAAAACCCTTTGGAATTAGTGAGAAGAAAAGTGTTAGGATTAAAGAGAGAAAAGAAATAGAGAATGCCCCTTTTGCTGCTAAGTCGTTTTCGGAACTCGGTATTCCGGAAGTGTTGATTGAGAGGTTAGGAAAAGAGGGTTTTAATGTTCCGACTGATGTTCAGTCTGCTGCGGTGCCTACCATTTTGAAGAACCGTGATGTGATAATTCAGTCGTATACGGGTTCGGGGAAGACACTGGCTTATCTGCTTCCTATATTGTCTGTTATTGGGCCGCTGAAAGGTGAAAATAATGAAGGGGGAGGTGATGGTGGTGAGTCTGGGAAGAAATTGGGAGTAGAAGCGGTGATTGTTGCTCCTTCGAGGGAGCTTGGAATGCAGATAGTTAGGGAGTTTGAGAAGATATTGGGAATGGAAAACAGGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACCAGGCAGGAAGAAGCCCTTAAGAAAAACAAACCTGCTATTGTTGTTGGTACGCCTGGTAGGATAGCCGAGCTTAGTGCAAGTGGGAAACTTCGTGCTCATGGCTGTCAATACTTGGTATTAGATGAAGTTGACGAGCTCCTTTCGTTCAATTTTCGGGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCGGGTGCAGACCATAACTCAAAAGCTAAAAAAACCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCTTTTTCGGTTGTAAGGGCAGCTAAAAGCTGGGGTTCTGACCCACTTCTTGTTCAAGCTAAGAAAATTGTACCGCTGGAAACTTTGTCACCTGAGCCTGTCAAATTGTCACCGAGCTCGAGTTCTACCCCATCTGTGCCCTCTAAGGCTGTGGTAGAGAGTCTACCTCCAGCATTGAAACACTATTACTGTGTAGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCACTGGATGCCAAATTCGTGATAGTTTTCATGAACCATACTAAGCAGTTAAAGGATGTTGTCTTCAAGCTGGAAGCCCGTGGAGTGAAAGCCGCAGAGTTACACGGGGATCTTGGGAAGCTTGGTAGGTCGACAACTCTGAAGAAGTTTAAGAATGGTGAGGTTAGAGTTCTTGTGACTAACGAATTATCAGCAAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTAAACCTGGACTTACCGACAGATTCTATTCACTATGCACACCGAGCTGGTCGAACTGGTCGGCTTGGTAGGAATGGTACTGTGCTGACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAATTGAAGAAGCAACTTGAAATACCGATTGCTTGCTGTAATTTCGTTGAGGGAAAGCTTACTATCACTGAAGAAGAGAATGCACTGAGAAGCACTTCTTGA 1662 0.4332 MEVSKNKAKFLVLVGESFPMRRALLNSRFAWFHSSVKCLNKHDSLTLSSVGFESEIEPKITSEENKVKPLGLSSSEGFKVKRKPFGISEKKSVRIKERKEIENAPFAAKSFSELGIPEVLIERLGKEGFNVPTDVQSAAVPTILKNRDVIIQSYTGSGKTLAYLLPILSVIGPLKGENNEGGGDGGESGKKLGVEAVIVAPSRELGMQIVREFEKILGMENRKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRAHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADHNSKAKKTERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVKLSPSSSSTPSVPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLKKQLEIPIACCNFVEGKLTITEEENALRSTS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2166 553 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 26 530 - -
Mtr2g2166 553 Gene3D - 379 536 IPR027417 -
Mtr2g2166 553 Pfam Helicase conserved C-terminal domain 397 502 IPR001650 -
Mtr2g2166 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 523 IPR027417 -
Mtr2g2166 553 SMART helicmild6 421 502 IPR001650 -
Mtr2g2166 553 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 26 530 - -
Mtr2g2166 553 SMART ultradead3 128 360 IPR014001 -
Mtr2g2166 553 Pfam DEAD/DEAH box helicase 133 327 IPR011545 GO:0003676|GO:0005524
Mtr2g2166 553 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 341 IPR014001 -
Mtr2g2166 553 CDD DEADc 120 342 - -
Mtr2g2166 553 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 541 IPR001650 -
Mtr2g2166 553 Gene3D - 80 343 IPR027417 -
Mtr2g2166 553 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Mtr2g2166 553 CDD SF2_C_DEAD 382 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2166 Mtr-Chr2 32262402 32264623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2166 110 536 Eukaryotic Initiation Factors Gene Family AT3G19760 25.231 3.47e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2166 - - gmx:100812968 814.298