Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2123 ATGACGACGGCGATCTCGGTGGCGGAACCCGAACTGAAAACATACTGGTGCCACGAATGTGACATGAGTGTTTCTTTAACTACTTCTCTCACCCCCTCTCCTCTACTCTGTCCCCATTGCGACACTCATTTCCTCGAACTCATGGACTCACCTTTTTCTCAAAACGACGCCGATTCTTCATCCCTATTCGATGTCGTTTTCCAAGATGCGCTTTTACTACTCACACCTCCTCCCCCGAAATCCCGCACTGAAACATCAATCCCTACAATAACCGTCACACAAACGCTTCTTACCTTACTCGATCCCTCAAACGGCGTCGTTATTTGCGCTGTTTGTAAAGAAACGGTTTCCGTTGACGAGGAAGCGAAACAGCTTCCTTGTGATCATCTTTATCATGCGGATTGTATTACTCCGTGGCTTCGGATTCGTTCTTCTTGTCCTCTTTGTCGGTGCGGAATTGTGGAGGATGAAGAGGATGAGGATGATGAGGAAGATGATATTAATGGTGGAGATGTGATGCGGGAGATGGTGATGCGGTTGTCGGAGTTGTCCGAGGATGATTTCTATGGATTGAGGATTACTCTGAATCACATTGCTTCACGTCATGCTCTGCTTCATTCTAATGATTCTGGTGCTGGTGAGAATGGTGGTGATGCTAGTGAACTTGGTGGTGTAGATGGAGAAGAATCTTAA 693 0.4675 MTTAISVAEPELKTYWCHECDMSVSLTTSLTPSPLLCPHCDTHFLELMDSPFSQNDADSSSLFDVVFQDALLLLTPPPPKSRTETSIPTITVTQTLLTLLDPSNGVVICAVCKETVSVDEEAKQLPCDHLYHADCITPWLRIRSSCPLCRCGIVEDEEDEDDEEDDINGGDVMREMVMRLSELSEDDFYGLRITLNHIASRHALLHSNDSGAGENGGDASELGGVDGEES* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2123 230 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
Mtr2g2123 230 Pfam Ring finger domain 109 150 IPR001841 -
Mtr2g2123 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 205 - -
Mtr2g2123 230 SMART ring_2 109 149 IPR001841 -
Mtr2g2123 230 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Mtr2g2123 230 SUPERFAMILY RING/U-box 103 156 - -
Mtr2g2123 230 MobiDBLite consensus disorder prediction 207 230 - -
Mtr2g2123 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 168 IPR013083 -
Mtr2g2123 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 13 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2123 Mtr-Chr2 31793484 31797387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2123 1 150 C3H Transcription Factor Family AT2G44330 30.667 3.58e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2123 K11982 - gmx:100775530 233.417