Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2106 ATGGAGCTTGATTTGAGTGAAAAGCCTGTGGAACGAATAGAAGAGCAAATGAAACGGATTGAAGCCATTTTCAAAGCTAAACAGAATCAGAAGTGGCAACAATGTCACAATCCAATTCAGATAACTAATTTTGATGGAGAACAGTTAACAAAAACTGATAATGTTGAAGATGATGAAAGCTGGATGACTATGGAAGAGGTTGAAGGAGCAACTTTGGAATGCAAGAAAACATGCAAAAGGAAGGCTCCCTGTTTAGTTGCCAATGCGTTGGGGATGGTGACATCCGCGAACGGTGTTGGGGGCCGTACTAGAAACTTCTTTGATTGTAATATATGTTTGGATACGGCAAATAATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATCAATTGGCATATGCTTATTCAAATGCTAAAGAGTGTCCTGTTTGTGAAGGAGAAGTCCTTGACACTGACATCATCCCAGTTTATGGAAATGGAATGATCGATGATATTAGCCGGTTGGAGTTGAAAGAAACTTGTTTGAGAGTTCCTGATCGACCTCATGCACCTAGAGTTGAAAGTACTAGGCAGCGGCGCAGAAGACGCACCGTCGCTTCTACAAACCAGGATTTGTCGTTGTTTGGTAACTTTGGTGGATTAGAAGAGCCAGATCCGATGCAATTCCCGAGTATTTCAACTGATGGAGCTATGTTTTAG 714 0.416 MELDLSEKPVERIEEQMKRIEAIFKAKQNQKWQQCHNPIQITNFDGEQLTKTDNVEDDESWMTMEEVEGATLECKKTCKRKAPCLVANALGMVTSANGVGGRTRNFFDCNICLDTANNPVLTCCGHLFCWECFYQLAYAYSNAKECPVCEGEVLDTDIIPVYGNGMIDDISRLELKETCLRVPDRPHAPRVESTRQRRRRRTVASTNQDLSLFGNFGGLEEPDPMQFPSISTDGAMF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2106 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 163 IPR013083 -
Mtr2g2106 237 Coils Coil 10 30 - -
Mtr2g2106 237 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Mtr2g2106 237 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 6 204 - -
Mtr2g2106 237 MobiDBLite consensus disorder prediction 185 204 - -
Mtr2g2106 237 Pfam Zinc finger, C3HC4 type (RING finger) 108 153 - -
Mtr2g2106 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 204 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr2g2106 237 SMART ring_2 109 149 IPR001841 -
Mtr2g2106 237 SUPERFAMILY RING/U-box 103 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2106 Mtr-Chr2 31530379 31532479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2106 76 200 C3H Transcription Factor Family AT3G58030 45.238 4.24e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2106 K10666 - gmx:100794016 187.193