Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2083 ATGGAGTCTTGGAGTTTTGATTCACGTGATAAAGGGTATGTTTCAAATGACACACTTGGTAGTAGAACCAAAGGTTCAATCTTAGGTTGGGATTTGAAAACCCCATCTAGTTTTTTACCTCAACAAAACATAGAAAATGACAACAATAATCATGGTTTTGAGGAATTGGGTTTTCATGGTATGTTGGGAAAACAATTGTCTAATGTTGTTGATGATGATGATGATGTTGTTGTTGGTAGCAAAATTGTCACTAGTAATTCTTTTGTTATGGCTACACCAAATGCATTTTCAGAAAGAGAACAACAACACTTCAATTCCAAGCATTCAAATTCAATAGGTGACACTAATGGTTCTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATAGAGATGGAATTGGTACACCATTTTCAAAGGGGACCACGATTTTGTCGTCTTCTGGGTCGTCGACACCATCGAAGAGGGTGAGGTCTTCGGCAATCCATTCTCAGATTGCTTACTGTCAAGTATATGGATGTAATAAGGATTTGAGTAGTTGTAAAGATTATCACAAGAGGCATAAAGTTTGTGAAGTTCATTCAAAGACTTCTAAAGTAATAGTGAATGGAATTGAACAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCAGGCCATAATGAACGTCGTAGAAAGCCACAAGTTGGTATTCATTCTGGAAGAGCTGGGAGGTTGCTTCAGTCATATGGGGATAGCAGATTCCAAGGAACCATGCTAACATCGGCATCTTTTATATGCCAAGACATACTCCCCGGTGAGGTCTTTTCTTCTGAGAAATGTGGAAATAGTAACTGGTGGAGACCTATAAAAGCCGAAGGTGGAACCGGTTTTAGGCCTCTTTCTTCTATTCCAATTACAAATGCACATCCTCAGTCAAGAACTCTGTTTCCTTCATACAACAATAAACAATTTCCTTTTCTTCAAGAAAACGGTGCTACATCTGCTACAGGAAGCATCTTCTGTGAAAACAATAGTCAATATCCTCCAATCCAAGGAGGCTCGAATTCCGGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGCGAAGACTTCAATGTTTTTGAAACAGAATCAGCTGTTCAAGGATTATCGGGAGTATCGGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCCCAATCCCAAAACTCTTCAAGCCAATCGACAGGAATTCCCATGCCTGGTCATTTAGTTATTCCGAGCAGCCATAGCCATTATAGCATGAGTCATGTTTCTGAAAGTGGCGTCTCGGATAGGTTTCCGTCTGAGTTAAATCATACGGATGGAAGTCATCTTAGTCCTATACTGATATCAAACAATAATGAAATCGCCCATTTTGAACTGGTAGATGGAGTTTTCCAAGGGTCAGATTTTGTCAACGTGAAAGACCGTCTTTCCTGTGAAGATGGCACGACCATTGACTTGCTTCAACTGTCGTCACAACTTCAGCGTGTTGAGCATCAGAGGCGAGCCTTGCAGGTGAAGCGAGAAAATGATTCTTCCTGCTCTCTACAGATTACGTAA 1620 0.4031 MESWSFDSRDKGYVSNDTLGSRTKGSILGWDLKTPSSFLPQQNIENDNNNHGFEELGFHGMLGKQLSNVVDDDDDVVVGSKIVTSNSFVMATPNAFSEREQQHFNSKHSNSIGDTNGSNSLIDLKLGRFGDHRDGIGTPFSKGTTILSSSGSSTPSKRVRSSAIHSQIAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYGDSRFQGTMLTSASFICQDILPGEVFSSEKCGNSNWWRPIKAEGGTGFRPLSSIPITNAHPQSRTLFPSYNNKQFPFLQENGATSATGSIFCENNSQYPPIQGGSNSGSQSLFQDTSLGSEDFNVFETESAVQGLSGVSDGGCALSLLSSQSQNSSSQSTGIPMPGHLVIPSSHSHYSMSHVSESGVSDRFPSELNHTDGSHLSPILISNNNEIAHFELVDGVFQGSDFVNVKDRLSCEDGTTIDLLQLSSQLQRVEHQRRALQVKRENDSSCSLQIT* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2083 539 SUPERFAMILY SBT domain 169 249 IPR036893 GO:0003677|GO:0005634
Mtr2g2083 539 Pfam SBP domain 171 244 IPR004333 GO:0003677
Mtr2g2083 539 PANTHER 1 PROTEIN, PUTATIVE-RELATED 38 539 - -
Mtr2g2083 539 Gene3D - 162 232 IPR036893 GO:0003677|GO:0005634
Mtr2g2083 539 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 539 IPR044817 GO:0003677
Mtr2g2083 539 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Mtr2g2083 539 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2083 Mtr-Chr2 31176909 31181994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2083 64 287 SBP-box Gene Family AT1G69170 45.133 4.41e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr2g2083 SBP 6.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2083 - - gmx:100777766 727.628