Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2081 ATGGGGAGAGGAAGGGTGCAATTGAAGAAGATTGAGAACAAGATCAATAGGCAAGTAACTTTTTCAAAGAGAAGATCTGGTTTACTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAACAAAGGAAAGCTCTATGAGTATTCAAGCGACCCCTGTATGGAAAAAATTCTAGAACGCTATGAAAGGTATTCATATGCAGAGAGGCAGCATGTTGCAAATGATCAGCCACAAAATGAAAATTGGATTATAGAACATGCAAGGTTGAAGACAAGGTTGGAAGTCATTCAGAAAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCCTAAGTATGAAAGAGCTTCAGCATTTGGAGCATCAACTTGATTCTGCTCTCAAACAGATTAGATCAAGGAAGAACCAACTCATGTATGAATCCATTTCAGAGCTCAGTAAAAAAGATAAGGCCCTCCAAGAAAAAAACAAATTGCTTACAACAAAGATAAAGGAGAAAGAGAAGGCACTGGCCCAACTTGAGCAGCAAAATGAGGATATGAATCTAGCCTCCACAGTTCTTGTACCTCAATCATTGGAGACATTGAATATTGGAAGTTCCCTTGAAGATAGAGATGATGGAGGAAATAATGAAGAAAGTCAAACCCATGGCAACGCCCATCTTCCACCTTGGATGCTTAATTAG 711 0.391 MGRGRVQLKKIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMEKILERYERYSYAERQHVANDQPQNENWIIEHARLKTRLEVIQKNQRNFMGEELDGLSMKELQHLEHQLDSALKQIRSRKNQLMYESISELSKKDKALQEKNKLLTTKIKEKEKALAQLEQQNEDMNLASTVLVPQSLETLNIGSSLEDRDDGGNNEESQTHGNAHLPPWMLN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2081 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mtr2g2081 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr2g2081 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Mtr2g2081 236 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mtr2g2081 236 MobiDBLite consensus disorder prediction 207 236 - -
Mtr2g2081 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 Coils Coil 158 192 - -
Mtr2g2081 236 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr2g2081 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr2g2081 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 212 - -
Mtr2g2081 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 212 - -
Mtr2g2081 236 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2081 Mtr-Chr2 31092716 31112083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2081 1 199 MADS-box Gene Family AT1G26310 63.682 2.05e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr2g2081 K-box 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2081 K09264 - gmx:100816836 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3995 4 53729854 53735560 Mtr2g2081 2 31092716 31112083 PCT