Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2040 ATGGAGCCTATGGATATTGTTGCAAAATCAAAGGAAGATGCTTCGCTACCTAAAGCAACGATGACGAAAATTATAAAAGAGATGTTACCTCCAGATGTGCGTGTTGCAAGAGATACCCAGGATTTGTTAATTGAATGTTGTGTAGAGTTCATAAACCTCGTCTCATCAGAGTCAAATGAAGTATGTAACAGAGAGGAAAGAAGGACGATTGCACCTGAGCATGTATTGAAAGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATGGAGACAGTGCAAGACTCTATAAAAGGTGCCAAGTGGAGTGGCGCAGCTGAGATGACCGAGGAACAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGGACCATTACTTCCAATCAACCAGATGCTGACCAAAGTTTAGAGAACTAA 471 0.4268 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVQDSIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTITSNQPDADQSLEN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2040 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Mtr2g2040 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Mtr2g2040 156 Coils Coil 115 135 - -
Mtr2g2040 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Mtr2g2040 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2040 Mtr-Chr2 30060059 30063681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2040 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 79.870 9.13e-90 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr2g2040 CBFD_NFYB_HMF 2.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2040 K21751 - gmx:547635 283.878