Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr2g2035 | ATGGCCGAATCCGACGACGACCACCACACCTCACCGGAAAACCAAATCAACGACAGTTACAAGAAGAAGAATAAGAAGCTTCGCAAGAGAAAAAGATCTCGTAAATTGGAACAAGAACTTGAAAAACAACAAAAGGAGAAGAATAATGAAAACACAGAATCTGAAGATGAAGAAGAAGAGAATAACGATAAAGACGGCAACGACGTAGTCGAAGAAGTAGAAGAGAAGAAAGTTGAAAATGTTTTGCCTTCTGGAATTCTGAGTACTGAGTCTTTTTCGTCTCTAGGGTTATCTGAACGTACTTCTCAGGCTATTGCTGCTATGAGTTTTACCCATATGACTCAGATTCAAGCGAAATCGATTCCGCCACTATTGATGGGAAAGGATGTTCTTGGTGCTGCTAGGACGGGTTCTGGTAAAACACTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTGCAATTTACACCTCGTAATGGAACTGGTGTTATCGTCATTTGTCCAACTAGAGAGCTTGCCATTCAGACACACGCTGTGGCAAGTGAACTAATGAAAGGTTATCATTCGCAAACTCTTGGAAAGGTTATTGGTGGTGTGGGTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGAGTAAATCTGTTGATTGCAACGCCTGGTCGTCTTCTTGACCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAATCAAACTTCGAGGAGGAAATGAAGCAGATCCTTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATATTGGGAGAGAAAAGGTCACTGTTGAAGGGTTGGAACAGGGTTATGTTGTTGTTCCCTGTGCCAAACGTTTTGTTGTTCTGTATTCATTCTTGAAGAGATACCAATCAAAAAAAGTGATGGTGTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCTGATCTTCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGAATTCCCGGACAAGTACCTTCTTCAATTTTTGCAAAGCAGAAAAAGGGATATTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTTTGATCCACCTGATGAACCAAAGGAATATATTCATAGAGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTACTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAAAAGCTTTCAAATGTACAATCTCAACTGGAGAAGATGGTGGCCAGCGTTTATCATTTGAACACTCTGGCCAAAGAAGCTTATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCTGTTTTACAAACCCACCGAAGATAAGTCTGAACATAGACAGCAGCGCTTCGAAGCATAGGAAGAAAATTCAAAAAGTGGAAGGAGGAAGAAGACATTGA | 1674 | 0.3996 | MAESDDDHHTSPENQINDSYKKKNKKLRKRKRSRKLEQELEKQQKEKNNENTESEDEEEENNDKDGNDVVEEVEEKKVENVLPSGILSTESFSSLGLSERTSQAIAAMSFTHMTQIQAKSIPPLLMGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGTGVIVICPTRELAIQTHAVASELMKGYHSQTLGKVIGGVGRKGEAERIVKGVNLLIATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILESNFEEEMKQILNILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDIGREKVTVEGLEQGYVVVPCAKRFVVLYSFLKRYQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQNSRTSTFFNFCKAEKGILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAFDDKKLSNVQSQLEKMVASVYHLNTLAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFCFTNPPKISLNIDSSASKHRKKIQKVEGGRRH* | 558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr2g2035 | 557 | MobiDBLite | consensus disorder prediction | 52 | 68 | - | - | |
| Mtr2g2035 | 557 | SMART | ultradead3 | 109 | 315 | IPR014001 | - | |
| Mtr2g2035 | 557 | MobiDBLite | consensus disorder prediction | 34 | 51 | - | - | |
| Mtr2g2035 | 557 | Coils | Coil | 26 | 62 | - | - | |
| Mtr2g2035 | 557 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 243 | 251 | IPR000629 | - | |
| Mtr2g2035 | 557 | Gene3D | - | 15 | 301 | IPR027417 | - | |
| Mtr2g2035 | 557 | CDD | DEADc_DDX18 | 101 | 299 | IPR044773 | GO:0003724|GO:0005524 | |
| Mtr2g2035 | 557 | Pfam | Domain of unknown function (DUF4217) | 473 | 533 | IPR025313 | - | |
| Mtr2g2035 | 557 | SMART | DUF4217_3 | 472 | 535 | IPR025313 | - | |
| Mtr2g2035 | 557 | SMART | helicmild6 | 351 | 432 | IPR001650 | - | |
| Mtr2g2035 | 557 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
| Mtr2g2035 | 557 | Pfam | Helicase conserved C-terminal domain | 327 | 431 | IPR001650 | - | |
| Mtr2g2035 | 557 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 162 | 453 | IPR027417 | - | |
| Mtr2g2035 | 557 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Mtr2g2035 | 557 | PANTHER | RNA HELICASE | 40 | 538 | - | - | |
| Mtr2g2035 | 557 | Pfam | DEAD/DEAH box helicase | 114 | 286 | IPR011545 | GO:0003676|GO:0005524 | |
| Mtr2g2035 | 557 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 121 | 297 | IPR014001 | - | |
| Mtr2g2035 | 557 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 | 40 | 538 | - | - | |
| Mtr2g2035 | 557 | CDD | SF2_C_DEAD | 312 | 442 | - | - | |
| Mtr2g2035 | 557 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 90 | 118 | IPR014014 | GO:0003724 | |
| Mtr2g2035 | 557 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 327 | 481 | IPR001650 | - | |
| Mtr2g2035 | 557 | Gene3D | - | 310 | 551 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr2g2035 | Mtr-Chr2 | 29997091 | 30005096 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr2g2035 | 90 | 450 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 31.694 | 4.42e-45 | 162 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr2g2035 | K13179 | - | gmx:100798290 | 840.491 |