Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2032 ATGGAATGGGTCCACTTGATCTTCCATGTAATCCTAGTATTCCATTTATACACCATCGAAGCACAATCATTAGAAACAACAACCATATCAAGAGACAACTTAACCATCATGTTTGTTGGTTTTTTATCTGCCTTAATTTTAATGGCCTTGTTTGCACTCTTACTCCGCCATTGCTCATCCACCTCCTATAGTTACAACTGTAACCTAATCACCGATCTATTCCGCCGCGGATTCAACCGTCGAGTCATCAACAAGTGCCCTATCCTCGTTCACTCCACCGGTAAAACGACGCTTGAATGTGCCATTTGCCTAAATGAGTTTCAACACAACGATAAAATAAGGTTGCTTCCGAAATGTTATCATGTTTTTCACCGAGATTGTATTGATGTTTGGTTACTCTCTCACATGAATTGTCCTATTTGTCGCTCCAAACTCATCCCTAATGTTCCAGAATCAGAGCAGCAACAAGAACAAGAACATAGTAGCACCATTACGGTGCCAGGGGAAGTGGCATCGGCTGATAATAACGAGAATGTTATTGTCTCTCCACATTCAACGGATCATTCATTAGCGGAACATTGCGCCATTTAA 591 0.4129 MEWVHLIFHVILVFHLYTIEAQSLETTTISRDNLTIMFVGFLSALILMALFALLLRHCSSTSYSYNCNLITDLFRRGFNRRVINKCPILVHSTGKTTLECAICLNEFQHNDKIRLLPKCYHVFHRDCIDVWLLSHMNCPICRSKLIPNVPESEQQQEQEHSSTITVPGEVASADNNENVIVSPHSTDHSLAEHCAI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2032 196 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Mtr2g2032 196 PANTHER RING FINGER DOMAIN-CONTAINING 33 189 - -
Mtr2g2032 196 SMART ring_2 100 141 IPR001841 -
Mtr2g2032 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 149 IPR013083 -
Mtr2g2032 196 SUPERFAMILY RING/U-box 99 148 - -
Mtr2g2032 196 CDD mRING-H2-C3H2C2D_ZSWM2 99 142 - -
Mtr2g2032 196 Pfam Ring finger domain 99 142 IPR001841 -
Mtr2g2032 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 33 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2032 Mtr-Chr2 29983074 29983783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2032 34 182 Rapid Response to Elicitors AT3G05200 33.929 1.31e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2032 K10664 - cpap:110812438 112.079