Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2019 ATGGAGGAAATCAACAGCACAGCTATGAACGTATCATCAAGCAGCAGCTGGTTATCGGATTTGGAAATGGACGAATACAATTTATTTGCTAAGGAATGCAACCTGAATTTCCTTGATACTAGTGTGGAAGATTTTCTTTCACATGACATAACTATTAATGTCTTCCAAGAACAAAATAAACAACAATGTTTAACTTCAGGGTCCACTTCCACAACTACTCTCAGCAACACATTTAGTGATGAAACAAAGTTGGATTGTTTTGACTTCAATATTGATAAGACTATTATGGAGATGAAAACAATTGATCATAGTGACAAAATCAATGAAACCTTTACCCAAAAACGTTCTTCATCTTTTCAAGTTCAAATTCCATCTTTTGACAGCCCCCCAAATTCACCTACTACTAGTTCCCAACAATACCCTACCTTAAATTCAATACAAAATGAAAGAGTTTCAGTGTCTCCAACCGAATTGGAAAATAAGAATCATTCAACAAAAACCTCAAAAACCTCAAAAACCAAAAGGTCTCGTGCTAATAATGGTGAGGATCATATCATGGCAGAGAGAAAGCGAAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCCAACCTTAAAAAGATGGACAAATTTTCTGTATTAGTTGACACTATCAAATACATGAAAGAGCTTAAAAAGCGTTTGGAAGTTTTAGAAGAACAAAACAAGAGAATAAAAACAGAATCACATGTGATTCTGACCAAACCAGACCTTTGCAGCGAAGATGATTCCTCATCATTTGATGAGCACAATGAAAGTGTTGTTGGTTCAATATTTCAAGTGGAAGCAAAAGTGTTAGGGAAATATATGTTGATTCGGATCCAATGTAAAGAATACAAGGGGCTTTTAGTGAAAATTATGGTCGAGATCCAAAGATTTCAACTATGTATTGTCAACAGTAGTGTTTTACCCTTTGGAGATTCTATCTTCGATATTACTATCATTGCTCAGTTGGGTGAAGGCTACAACTTGAGCATAAAGGAACTTGTGAAGAACATACGCAAAGAAGCATTGAAGTTTATGTCATCACGATAA 1086 0.3564 MEEINSTAMNVSSSSSWLSDLEMDEYNLFAKECNLNFLDTSVEDFLSHDITINVFQEQNKQQCLTSGSTSTTTLSNTFSDETKLDCFDFNIDKTIMEMKTIDHSDKINETFTQKRSSSFQVQIPSFDSPPNSPTTSSQQYPTLNSIQNERVSVSPTELENKNHSTKTSKTSKTKRSRANNGEDHIMAERKRREKLTQSFIALAALVPNLKKMDKFSVLVDTIKYMKELKKRLEVLEEQNKRIKTESHVILTKPDLCSEDDSSSFDEHNESVVGSIFQVEAKVLGKYMLIRIQCKEYKGLLVKIMVEIQRFQLCIVNSSVLPFGDSIFDITIIAQLGEGYNLSIKELVKNIRKEALKFMSSR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2019 361 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 359 - -
Mtr2g2019 361 MobiDBLite consensus disorder prediction 118 161 - -
Mtr2g2019 361 Gene3D - 157 246 IPR036638 GO:0046983
Mtr2g2019 361 Pfam Helix-loop-helix DNA-binding domain 184 228 IPR011598 GO:0046983
Mtr2g2019 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Mtr2g2019 361 SMART finulus 185 234 IPR011598 GO:0046983
Mtr2g2019 361 MobiDBLite consensus disorder prediction 118 185 - -
Mtr2g2019 361 PANTHER BHLH TRANSCRIPTION FACTOR 7 359 - -
Mtr2g2019 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 248 IPR036638 GO:0046983
Mtr2g2019 361 Coils Coil 218 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2019 Mtr-Chr2 29512056 29515188 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2019 141 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.807 3.39e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g2019 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2019 - - mtr:MTR_0011s0210 632.484