Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2016 ATGGAGGAAATCAACAGCACAGCTATGAACGTATCATCAAGCAGCAGCTGGTTATCTGATTTGGAAATGGACGAACACAATTTATTTGCTGAGGAATGCAACCTGAATTTCCTTGATACTGGTGTGGAAGATTTTCTTTCACATGACATAACTAATATCTTCCAAGAACAAAATAAACAACAATGTTTAATTTCAGGGTCCACTTCCACAACTACTCTCAGCAACACATTTAGTGATGAAACAAAGTTGGATTGTTTTGACTTCAATATTGATAAGACTATTATGGAGATGAAAACAATTGATCATAGTGACAAAATCAATGAAACCTTTACCCAAAAACGTTCTTCATCTTTTCAAGTTCAAATTCCATCTTTTGACAGCCCCCCAAATTCACCTACTACTAGTTCCCAACAATACCCTACCTTAAATTCAATACAAAATGAAAGAGTTTCCGTGTCTCCAACCGAATTGGAAAATAAGAATCATTCAACAAAAACCTCAAAAACCAAAAGGTCTCGTGCTAATAATGGTGAGGATCATATCATGGCAGAGAGAAAGCGAAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCCAACCTTAAAAAGATGGACAAATTTTCTGTATTGGTTGACACTATCAAATACATGAAAGAGCTTAAAAAGCGTTTGGAAGTTTTAGAAGAACAAAACAAGAGAACAAAAACAGAGTCGCATGTGGTTCTGACCAAACCAGACCTCTGCAGCGAAGATGATTCCTCATCATTTGATGAGCGCAATGAAAGTGTTGTTGGTTCAATATTTCAAGTGGAAGCAAAAGTGTTAGGGAAATATATGTTGATTCGGATCCAATGTAAAGAATACAAGGGGCTTTTAGTGAAAATTATGGTCGAGATCCAAAGATTTCAACTATATGTTGTCAACAGCAGTGTTTTACCCTTTGGAGATTCTATCCTCGATATTACTATCATTGCTCAGTTGGGTGAAGGCTACAACTTGAGCATAAAGCAACTTGTGAAGAACATACGCAAGGAAGCATTGAAGTTTATGTCATTATAA 1071 0.366 MEEINSTAMNVSSSSSWLSDLEMDEHNLFAEECNLNFLDTGVEDFLSHDITNIFQEQNKQQCLISGSTSTTTLSNTFSDETKLDCFDFNIDKTIMEMKTIDHSDKINETFTQKRSSSFQVQIPSFDSPPNSPTTSSQQYPTLNSIQNERVSVSPTELENKNHSTKTSKTKRSRANNGEDHIMAERKRREKLTQSFIALAALVPNLKKMDKFSVLVDTIKYMKELKKRLEVLEEQNKRTKTESHVVLTKPDLCSEDDSSSFDERNESVVGSIFQVEAKVLGKYMLIRIQCKEYKGLLVKIMVEIQRFQLYVVNSSVLPFGDSILDITIIAQLGEGYNLSIKQLVKNIRKEALKFMSL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2016 356 Pfam Helix-loop-helix DNA-binding domain 180 224 IPR011598 GO:0046983
Mtr2g2016 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 245 IPR036638 GO:0046983
Mtr2g2016 356 Gene3D - 159 242 IPR036638 GO:0046983
Mtr2g2016 356 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 355 - -
Mtr2g2016 356 MobiDBLite consensus disorder prediction 117 160 - -
Mtr2g2016 356 MobiDBLite consensus disorder prediction 117 177 - -
Mtr2g2016 356 PANTHER BHLH TRANSCRIPTION FACTOR 7 355 - -
Mtr2g2016 356 MobiDBLite consensus disorder prediction 161 177 - -
Mtr2g2016 356 SMART finulus 181 230 IPR011598 GO:0046983
Mtr2g2016 356 Coils Coil 214 241 - -
Mtr2g2016 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2016 Mtr-Chr2 29479144 29482167 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2016 163 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.784 5.02e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g2016 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2016 - - mtr:MTR_0011s0210 610.142