Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g2005 ATGGATCCACCACCACTTTGTCTTAATAATTGCAGTTCTGCTATAGACAAATTCTTGTGTCCAAAATGTTCTGATGATTGTCTCACTCTATCAGAAATTGAAGGTCTTATTCTTGGGTCATCTCCTTCTCAAAACTCAAGTATTTTAGAAATTGATTCCATTACTGTCACAGACACTACTGGCAAGAAGAATAACAATAGGTGCAAGACTTGCAACAAAAGAATTGGATTAACAGGATTCGAGTGTCGTTGTGGTGATGTATTTTGTGGAAGGCATAGGTATCCAGAAACACACTCTTGTAATGTTGATCTGAAAAGCATTGGTCGTCAAATTTTGGCTAAACAAAATCCAAAATGTGTCCTAAATAAACTAGAATTTAGGGTATAG 387 0.3592 MDPPPLCLNNCSSAIDKFLCPKCSDDCLTLSEIEGLILGSSPSQNSSILEIDSITVTDTTGKKNNNRCKTCNKRIGLTGFECRCGDVFCGRHRYPETHSCNVDLKSIGRQILAKQNPKCVLNKLEFRV* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g2005 128 Pfam AN1-like Zinc finger 68 101 IPR000058 GO:0008270
Mtr2g2005 128 SUPERFAMILY AN1-like Zinc finger 53 120 IPR035896 -
Mtr2g2005 128 Gene3D - 40 121 IPR035896 -
Mtr2g2005 128 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 128 - -
Mtr2g2005 128 SMART AN1_Zf_4 68 105 IPR000058 GO:0008270
Mtr2g2005 128 ProSiteProfiles Zinc finger AN1-type profile. 62 108 IPR000058 GO:0008270
Mtr2g2005 128 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 4 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g2005 Mtr-Chr2 29035130 29035516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g2005 51 125 C2H2 Transcription Factor Family AT3G52800 52.000 8.40e-24 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g2005 - - mtr:MTR_2g054650 262.692