Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1950 ATGGCGAAACTATCACAACAGCAAACTCAGAAAAACAATGCAAGAAATAACAATAACCTTAAAGCAACTAATACCGTCGTTGTTGACAACAAAGTGAAAAGAACAAGGAGAAGTGTCCCAAGAGATTCTCCAATTCAACGTAGCTCAATATATAGAGGAGTCACTAGGCATAGATGGACAGGCCGGTATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCGCAAAACAAAAAAGGACGACAAGTGTACCTCGGAGCTTATGACGATGAAGAGGCAGCTGCACATGCGTATGATCTAGCAGCATTGAAATATTGGGGTCCGGATACCATTCTTAACTTTCCGTTATGTACCTACGAGATTCAATTGAGAGAAATGGAGGATCAGTCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGTGGTTTTTCGCGGGGAGTTTCTAAATACAGGGGTGTCGCAAGACACCATCATAACGGAAGGTGGGAGGCTCGTATCGGTAGGGTTTTTGGCAACAAATATCTTTATCTTGGAACATATGCCACACAAGAAGAAGCTGCCACAGCTTACGACATGGCAGCTATTGAATATCGAGGACTTAATGCTGTTACCAATTTTGACCTCAGCCGCTATATTAAATGGCTTAAGCCTAATCACAACAACGATATTAACAAAATTAGCACCAAACTTATTGATTCTAACCCAACCTGTGAAACCAGTTTTATGCAAAAATTTACTAATCAAGAACAACAAGGACATAATTTCATCCATGCTCAAGATGAGTCATTAAATAATAATGGAGATGAAGCAGCAATAACACAGCCTCGAACAACTGGCACCACGTCGGCATTAGGTCTTTTGCTTCAATCATCAAAGTTTAAGGAGATGATGGAAATGACAAATGCTGCTGATTTATCCCCAACACCACAAAAATCATACACATTTCCTAATGACATTCAGACATACTTTCAGTGTGATATTAATTCTTCCACTACTAAATATGGGGAAGGGGATGATCTGTTCCATGACCTAAACTCTTTTGTGCCACCTTTATTTGATTCAGATGACTTTGATCTATGCTTAAAGGTCTAG 1101 0.3969 MAKLSQQQTQKNNARNNNNLKATNTVVVDNKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGPDTILNFPLCTYEIQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNNDINKISTKLIDSNPTCETSFMQKFTNQEQQGHNFIHAQDESLNNNGDEAAITQPRTTGTTSALGLLLQSSKFKEMMEMTNAADLSPTPQKSYTFPNDIQTYFQCDINSSTTKYGEGDDLFHDLNSFVPPLFDSDDFDLCLKV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1950 366 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 339 - -
Mtr2g1950 366 CDD AP2 49 116 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677
Mtr2g1950 366 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 MobiDBLite consensus disorder prediction 1 23 - -
Mtr2g1950 366 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Mtr2g1950 366 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 339 - -
Mtr2g1950 366 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 Pfam AP2 domain 50 108 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Mtr2g1950 366 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Mtr2g1950 366 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Mtr2g1950 366 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1950 Mtr-Chr2 26208939 26212033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1950 46 214 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.03e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Mtr2g1950 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1950 K09285 - gmx:100795869 508.449