Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1909 ATGGCTTTTCATCACGACCATCTCTCTCATGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAATCAAAGCAGAGATATGCAAAGACTACTACCATTCACCGGAGCCGGTGCCGGATCAGCGCCAAATTGGCTCAACAACGCTGTAAACCTACGGCAGCAGAATTTCCTCCACTTACAGCCAGATACATCACAAAACGAGGACGTAAGAGGTATCACCCGGGATCGAAACCGGGCCGAAAGCAACACAGAATCATCAGAGGAGTTATCACAATATAAAGCAGACATATTAGGACACCCTCTTTACGATCAGCTTCTATCTGCTCATGTTTCGTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTGGATAAGTACTCTTCACTTGCTAATGCTAATGGTGTTGTGGATGAAAAGGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTCTGTGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGTGAAGGGAGTGGTGCAACAATGTCGGACGATGAAGATGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGACAGGAGTTGAAGCACGAGCTAAAACAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTCCCGGGTGACACCACCTCCCTTTTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCTACTGAAGAAGACAAGGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGCAAGAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGTTTCATATGA 1104 0.4529 MAFHHDHLSHEINFQPFNEEQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGITRDRNRAESNTESSEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFI* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1909 367 CDD homeodomain 281 342 IPR001356 GO:0003677
Mtr2g1909 367 Pfam KNOX2 domain 151 200 IPR005541 GO:0003677|GO:0005634
Mtr2g1909 367 SMART ELK_2 258 279 IPR005539 GO:0003677
Mtr2g1909 367 Pfam Homeobox KN domain 298 337 IPR008422 GO:0003677|GO:0006355
Mtr2g1909 367 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 32 360 - -
Mtr2g1909 367 MobiDBLite consensus disorder prediction 70 85 - -
Mtr2g1909 367 SUPERFAMILY Homeodomain-like 280 344 IPR009057 -
Mtr2g1909 367 MobiDBLite consensus disorder prediction 335 367 - -
Mtr2g1909 367 MobiDBLite consensus disorder prediction 62 89 - -
Mtr2g1909 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 360 - -
Mtr2g1909 367 Pfam ELK domain 258 279 IPR005539 GO:0003677
Mtr2g1909 367 Gene3D - 284 360 - -
Mtr2g1909 367 Pfam KNOX1 domain 94 135 IPR005540 GO:0003677|GO:0005634
Mtr2g1909 367 SMART KNOX2_2 146 201 IPR005541 GO:0003677|GO:0005634
Mtr2g1909 367 ProSiteProfiles 'Homeobox' domain profile. 278 341 IPR001356 GO:0003677
Mtr2g1909 367 SMART HOX_1 280 345 IPR001356 GO:0003677
Mtr2g1909 367 SMART KNOX1_2 92 136 IPR005540 GO:0003677|GO:0005634
Mtr2g1909 367 ProSiteProfiles ELK domain profile. 258 278 IPR005539 GO:0003677
Mtr2g1909 367 MobiDBLite consensus disorder prediction 201 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1909 Mtr-Chr2 23739818 23746186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1909 92 364 Homeobox Transcription Factor Family AT5G11060 82.909 2.73e-167 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr2g1909 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1909 - - gmx:100816347 620.542