Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1858 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAAAATGGGAATCATAGTAACGACGGTGATAAAAGTCCGAATGCGTATGATAATGATACTTTGTTGTTTATTGCCAAGGCTCAAGAGTTGAAGGAAGAAGGTAATAAGATGTTTCAAAAGAGGGATCTTCGAGGAGCTATGGTAAGGTATGAAAAAGCGCTCAAATTGCTTCCGAGAGATCATATAGATGTGTCGTATGTGCGGAGTAATATGGCTGCGTGCTATATGCAGATGGGACTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATTTGGCTCTTGAAGTTACTCCGAAATACGGTAAAGCTTTGTTGAAGAGAGCGAGGTGTTACGAGGCTTTGAATAGATTGGATTTAGCATTGAGAGATGTTAGTACTGTTTTGAAGATAGAGCCGAATAATATCATGGCGTTGGAGATCTCAGATAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTAAATGATGAGAAAATTGAGTTGCCTCCGGATTATGTCGAACCATCTTTTGATGTGCCTTCCGAAAAGGCGAAAGAAAAGAAACAGAAGAAAAAGAGCAAAAAAGAGAAGGTGAAGGCTTCTGATGAAATTGTAGAGAAGCAAGCTGAGGAGAAACTAGAAGAGAAGAAAGAGGAGGACAACATTGCACCAAATAAGGCTGAGGACGATCATCTTAAAGAGAAAAAGAGTAATAAATCGAAAAAGAAGGCAGCCAAGGAAAAAATTGATAAGCAGAAAGAGGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGCGTAGATGTACCTAAGAAAACAGCAAAACTTGTTTTTGGTGATGATATAAGATGGGCTCAATTGCCGATTAATTGCAGCCTTTTTCAGCTAAGAGAAGTTATTTGTGACAGGTTCCCAAGCCTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGCGACTTGATCACAATCACTTCGGATGAAGAATTGAAGTGGGCTGAAACAGGATCACAGGGTTCTATTCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCATTCTATGAGAAACTTCATCTGAATTATGTGGAAAAGGTTGAAATGGATAATGCTCCTAAGAGCGGTAGTGTGGTGAAATCGAAGGAAATTGTTAGCTCATCTTGCGTTGAGGATTGGATAATAAAGTTCGCAGATTTGTTTAAAAATCATGTTGGGTTTGAATCCGACAGATACTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTGGAAGAGACGGTTACAAGTGAAGAAGCGCAAGGCCTATTTGACATGGCAGGAGGTAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTGTATTTAACCGAAGAAGATTCTTCTAAAGAGCATATGTGTGAACAAATTAAAAGTTCGTATGAATGGGCGCAGAAAGAATATGCAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTACGAAGGCTTTCTTGCTCTTGGTCAGCAGCGGTTCGAACAAGCGAAACTTTCCTGGTATTATGCACTCAGTAGTAATATAGATTTACCAACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAATGCTGAGGAGAATATGGAAAAAGGAATGCTGATATGGGAAGAATCACAAGAGCAGCAGCTCAATGAAACCTCCACTACCGGGTTGGATGGGTTATTTGAAAATATGTCATCAGATGAAACTGCTGTGCTGGCGGCAAACATGAGGTCACAGATAAATCTCTTGTGGGGTACTATGCTGTATGAACGCTCACTTGTGGAATTCAAATTAGGGCTACCCGTATGGCATGAATCATTGGAAACTGCGATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATGTAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTTCATCCTTTCGTTTGGAACCCTTGTTCAGAAGAAGGGTATCGAAGATTTACCATGCCTTTGAGCTTGTATGA 2178 0.3981 MGKKKKQVGETSEENGNHSNDGDKSPNAYDNDTLLFIAKAQELKEEGNKMFQKRDLRGAMVRYEKALKLLPRDHIDVSYVRSNMAACYMQMGLGEYPRAINECNLALEVTPKYGKALLKRARCYEALNRLDLALRDVSTVLKIEPNNIMALEISDKVKSALEDRGLRVNDEKIELPPDYVEPSFDVPSEKAKEKKQKKKSKKEKVKASDEIVEKQAEEKLEEKKEEDNIAPNKAEDDHLKEKKSNKSKKKAAKEKIDKQKEDVKEVNEEKSNGRSVDVPKKTAKLVFGDDIRWAQLPINCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLHLNYVEKVEMDNAPKSGSVVKSKEIVSSSCVEDWIIKFADLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEEDSSKEHMCEQIKSSYEWAQKEYAKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYALSSNIDLPTWPSTEVLHLYNNAEENMEKGMLIWEESQEQQLNETSTTGLDGLFENMSSDETAVLAANMRSQINLLWGTMLYERSLVEFKLGLPVWHESLETAIEKFEHAGASPTDVAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVSSFRLEPLFRRRVSKIYHAFELV* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1858 725 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Mtr2g1858 725 MobiDBLite consensus disorder prediction 1 20 - -
Mtr2g1858 725 Gene3D - 281 357 - -
Mtr2g1858 725 MobiDBLite consensus disorder prediction 177 275 - -
Mtr2g1858 725 SUPERFAMILY TPR-like 39 152 IPR011990 GO:0005515
Mtr2g1858 725 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Mtr2g1858 725 PANTHER PROTEIN PHOX3 2 724 - -
Mtr2g1858 725 Pfam PB1 domain 282 355 IPR000270 GO:0005515
Mtr2g1858 725 MobiDBLite consensus disorder prediction 1 28 - -
Mtr2g1858 725 Coils Coil 242 269 - -
Mtr2g1858 725 Coils Coil 188 226 - -
Mtr2g1858 725 ProSiteProfiles PB1 domain profile. 280 357 IPR000270 GO:0005515
Mtr2g1858 725 MobiDBLite consensus disorder prediction 250 275 - -
Mtr2g1858 725 CDD PB1 288 354 - -
Mtr2g1858 725 SMART tpr_5 114 147 IPR019734 GO:0005515
Mtr2g1858 725 SMART tpr_5 40 73 IPR019734 GO:0005515
Mtr2g1858 725 SMART tpr_5 78 113 IPR019734 GO:0005515
Mtr2g1858 725 SUPERFAMILY CAD & PB1 domains 283 366 - -
Mtr2g1858 725 SMART PB1_new 280 357 IPR000270 GO:0005515
Mtr2g1858 725 Gene3D Tetratricopeptide repeat domain 38 167 IPR011990 GO:0005515
Mtr2g1858 725 MobiDBLite consensus disorder prediction 203 243 - -
Mtr2g1858 725 PANTHER PROTEIN CLMP1 2 724 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1858 Mtr-Chr2 22120889 22127415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1858 23 147 Calmodulin-binding Proteins AT3G25230 34.328 4.26e-10 60.8