LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr2g1843	ATGAAGCAGTCTTTCGATCCTTCATTTATCGCTCCTTCCAAGATTCCACCTATAAATACAGCTGGAAAATTGAGGCATGGTGCTTTGGAAGTTTCATCTGGATCTGATTCATACCACGCTTCATCTGATGCCAGTCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAGTTGAACTTAAATGAAACTGAAAATGGTTTTCAATCTGTTGATGACATCTCAACTAACTTTAAAAAACATCATCAAGAGGCAGAGCTTAATGGTTCCCTTGACAATGGTAATAATCACGCAATCGGAACCATGCTTCCTGATGATGACGAAGAGCTTTTGGCTGGCATAATGGATGATTTTGACTTACGCGGTTTGCCTGGTTCCCTTGAGGACTTAGAAGAGTATGATCTTTTTGATAGTAGTGGAGGCTTGGAACTAGAAACGGATCCACAGGAAAGCCTCAGTGTGGGTATATCTAAGTTAAGCCTTTCTGATAGCTCTGTTGGAAATAGTATGCCCCCTTATTCTTTACCTAATGGTGTGGGAGGCGGAGCTGTTGCTGGGGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACAGAGCTGCGGACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGGTTTGTAATGATATCATATTATGACATCCGTGCTGCTCGGACAGCTATGCGTGCATTACAAAATAAACCTTTGCGGCGAAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAAGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCAGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATACTATGATGTAAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCTTGACCAAGATGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCGGCTCTCCGCCAGGTAATTGGTTACAGTTCAACAGTCCTATTGAGCAGAGTTCATTGCCAAATTTAAATCATTCTCCTGGTTCCAAAATTATGAGCCCAACAACCAGCAACCATTTACCGGGATTAGCTTCAATTTTGCAACCACAGTTGTCGAACACAGTGAAGGCCGCAACTATTGGCCAGGACATAGGAAGGAGTAGTCATGGAGACCACATATTTCCCAATAAGATTTCATCCGCTGGATCTAATTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCCATATCGTGGAGCTTTGTCCTCGTTTGGTGCATCAACATCAAATGGGTCGTCAGTGGAAACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACTTATCCTCAGAGCCAACCAAGCCTTCAGCTTGGCCAAGGCCATCTGTGGGACATCAACTTAGTACATCGAATGGAACGAGTCATGCTTTCCCATACTCAAGTCAGAACAATTCCTTTGTCAGTTCGTCTCAGCAGCAACATCATCATCATCATGTCGGTTCTGCTCCTTCAGGTTTGCCTTTTGAAAGGCACTTCGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGAGGCATGGGTCTAGGGCACAATGATGGAAATTACATGCTTAATAGTGGCATTTCTGGTAATGTTGGCATTTCTATTCCAAGAAATATGCCTGACAATGGTTCATCAAACTTCCGAATGAGATCTTCTCCTATACTTAGCCCTGTATTTTTAGGTAATGGTCCTTATCCAGGACTACTACCTACTGCTATGGAGAGTTTTACTGACCGTGTTAGGAGTAGATGGATCGACAACAATGGAAGCCAAGTTGACAACAAGAAGCTATTTCAGCTCGACTTAGATAAGATTAGAAGTGGTGAAGATACAAGGACTACGCTGATGATAAAGAATATCCCAAATAAATACACATCAAAAATGTTGTTAGCTGCCATTGATGAAAATCACAAGGGCACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAACGTCGGTTATGCATTTATCAACATGTTGTCACCATCGCTTATCATTCCATTCTACGAGACATTCCATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCGTATGCTCGAATCCAAGGGAAGAATGCCCTCGTAAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAACGCTGCCGACCTATTGTCTTCCACTCAGATGGTTCTGAAGTTGCTGATCAGATCGTACAAGAGCATCTCCCCTCCAACTCCAACAATATGTATATTCAGGCAGTTAAGTCAAGTGAGTTACAATTAAGCGATTCCTTCGGATACTTTCCAAAGGATGGTCCTCCTATGAGTTTGAATGCAAATTAA	2598	0.4145	MKQSFDPSFIAPSKIPPINTAGKLRHGALEVSSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGFQSVDDISTNFKKHHQEAELNGSLDNGNNHAIGTMLPDDDEELLAGIMDDFDLRGLPGSLEDLEEYDLFDSSGGLELETDPQESLSVGISKLSLSDSSVGNSMPPYSLPNGVGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLAGSPPGNWLQFNSPIEQSSLPNLNHSPGSKIMSPTTSNHLPGLASILQPQLSNTVKAATIGQDIGRSSHGDHIFPNKISSAGSNFNSHSLPEPKFSPYRGALSSFGASTSNGSSVETLTAPQFLWGSPNLSSEPTKPSAWPRPSVGHQLSTSNGTSHAFPYSSQNNSFVSSSQQQHHHHHVGSAPSGLPFERHFGFFPKSSETSLMNNVGYRGMGLGHNDGNYMLNSGISGNVGISIPRNMPDNGSSNFRMRSSPILSPVFLGNGPYPGLLPTAMESFTDRVRSRWIDNNGSQVDNKKLFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFHGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEVADQIVQEHLPSNSNNMYIQAVKSSELQLSDSFGYFPKDGPPMSLNAN*	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr2g1843	865	CDD	RRM3_MEI2_like	702	787	IPR034454	-
	Mtr2g1843	865	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	281	354	IPR000504	GO:0003723
	Mtr2g1843	865	Gene3D	-	185	279	IPR012677	-
	Mtr2g1843	865	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	2	848	-	-
	Mtr2g1843	865	MobiDBLite	consensus disorder prediction	511	570	-	-
	Mtr2g1843	865	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	262	IPR000504	GO:0003723
	Mtr2g1843	865	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	283	348	IPR000504	GO:0003723
	Mtr2g1843	865	MobiDBLite	consensus disorder prediction	511	565	-	-
	Mtr2g1843	865	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	196	269	IPR000504	GO:0003723
	Mtr2g1843	865	CDD	RRM1_MEI2_like	195	271	IPR034453	-
	Mtr2g1843	865	SUPERFAMILY	RNA-binding domain, RBD	193	356	IPR035979	GO:0003676
	Mtr2g1843	865	Pfam	RNA recognition motif 2	699	795	IPR007201	-
	Mtr2g1843	865	Gene3D	-	280	378	IPR012677	-
	Mtr2g1843	865	SUPERFAMILY	RNA-binding domain, RBD	701	786	IPR035979	GO:0003676
	Mtr2g1843	865	SMART	rrm1_1	282	350	IPR000504	GO:0003723
	Mtr2g1843	865	SMART	rrm1_1	197	265	IPR000504	GO:0003723
	Mtr2g1843	865	SMART	rrm1_1	701	777	IPR000504	GO:0003723
	Mtr2g1843	865	PANTHER	PROTEIN MEI2-LIKE 2	2	848	-	-
	Mtr2g1843	865	CDD	RRM2_MEI2_like	280	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr2g1843	Mtr-Chr2	21835604	21842115	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr2g1843	191	389	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.009	3.68e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr2g1843	-		-	gmx:100787152	1400.19