Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1842 ATGGGCCGTGGGAAATTAACTATTAAACACATTCAAGATTGGAAAGCTCGGAAATCAAGTTTCAATCAGAGAAGCAATGGATTGGCGAAAAAAGTTTCTGAATTTTCTAGCAAATTTGGAGTTGAAGCTTGCTTAATTGTGTATGATGGTGATGGTAGACTATTGACTTGGCCGCAAAACTCCATCGTTGTACAATCCATTCTTAAAACGTACGAGCTTCAAAAGATTGAGACAACTCCGAAGATCTTTGATGTGAAGGACTATTTTGCAAATAAGAAGAATAAGGTTGAAGGTGAGATTTCCAAAGTGCACAAAGAGATTGTGATGAAAATGTATCCAACTTGGCACCCATGCTTCATGAACATGGATGGGGAACAACTCAAAACTTTCATTGGTATTCTAGATGCCAAGATTCAAGCTTGTAATCACAAAATTAGCATGCTAAAGAAAATGCAACAAAGAACTGAAAATGGTTTCATGCTAAACACTACTCAGATGCAAAATGTGGCTCCAAAGAATGTTGTCTCCACACATTTGAAGCCACTTAGTGATACTAATCGACTTGGTGAAGTTGAAGAATTGGATGATTTTATGGATTGGGCTAATCAAGTACTTGATAATGTTGCATATTTGGATGATCCAGTTACTAAACCTGGTCAGGAATGGGAAACTCAATTTATGGATTTTGATGCTTTGCCGGAAACAAGAGATGGATTTTAA 720 0.3694 MGRGKLTIKHIQDWKARKSSFNQRSNGLAKKVSEFSSKFGVEACLIVYDGDGRLLTWPQNSIVVQSILKTYELQKIETTPKIFDVKDYFANKKNKVEGEISKVHKEIVMKMYPTWHPCFMNMDGEQLKTFIGILDAKIQACNHKISMLKKMQQRTENGFMLNTTQMQNVAPKNVVSTHLKPLSDTNRLGEVEELDDFMDWANQVLDNVAYLDDPVTKPGQEWETQFMDFDALPETRDGF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1842 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Mtr2g1842 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr2g1842 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr2g1842 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr2g1842 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr2g1842 239 PANTHER PROTEIN, PUTATIVE-RELATED 3 204 - -
Mtr2g1842 239 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Mtr2g1842 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mtr2g1842 239 CDD MADS 2 58 - -
Mtr2g1842 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr2g1842 239 PANTHER MADS BOX PROTEIN 3 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1842 Mtr-Chr2 21826143 21826862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1842 1 115 Type I MADS-box Gene Family AT5G55690 31.148 3.67e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g1842 SRF-TF 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1842 - - mtr:MTR_2g049610 492.656