LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr2g1840	ATGGGTCGTCCACGTGGAAAATTAACTTTGAAACAAATTCAAGATAAAAGAGCTCGGAAATTAGCTTTCAATCATAGAAGCAAGAGATTGGCAAAAAAAGTTTCTAAATTTTCTAACAAGTTTGGAGTTGAAGCTTGCTTGATTGTATATGATGGTTCTGGTGAAGGTAGACCAATAACTATGCCACAAGATTCGACAATTGTTCGGTCCATGCTTGAAAACTATGAGCAACAAAAGATTGAGAGTATAACTACAAAGATCTTTGATGTGAAGGACTATTTTGCAAATAAGAAGAATAAGATTGAAGGTGAGATTTCCAAAGTGCAGAAAGAGATTGTGAAGAACAAGTATCCAACTTGGGATCCATGTTTCATTAACATGGATGGTGAACAACTCAAAGCCTTCACTGCTATTGTAAATGCCAAGATTGAAGCTTGTGATCAAAGAATTAGCATGCTGAAAACTATGCACCAAGGTGATCAAACTAGTGCCTTGCATGACACTCCTCAAAGGCAGCATACCCTTCATTACGGGAGTGCCCGTCTGGACGCTAGTAATAATAATGACAATAGATTCTAA	579	0.3731	MGRPRGKLTLKQIQDKRARKLAFNHRSKRLAKKVSKFSNKFGVEACLIVYDGSGEGRPITMPQDSTIVRSMLENYEQQKIESITTKIFDVKDYFANKKNKIEGEISKVQKEIVKNKYPTWDPCFINMDGEQLKAFTAIVNAKIEACDQRISMLKTMHQGDQTSALHDTPQRQHTLHYGSARLDASNNNDNRF*	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr2g1840	192	ProSiteProfiles	MADS-box domain profile.	3	63	IPR002100	GO:0003677\|GO:0046983
	Mtr2g1840	192	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	13	55	IPR002100	GO:0003677\|GO:0046983
	Mtr2g1840	192	PANTHER	MADS BOX PROTEIN	5	190	-	-
	Mtr2g1840	192	SUPERFAMILY	SRF-like	5	97	IPR036879	GO:0003677\|GO:0046983
	Mtr2g1840	192	Gene3D	-	15	77	IPR036879	GO:0003677\|GO:0046983
	Mtr2g1840	192	PANTHER	PROTEIN, PUTATIVE-RELATED	5	190	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr2g1840	Mtr-Chr2	21777035	21777613	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr2g1840	1	121	Type I MADS-box Gene Family	AT5G55690	34.127	1.04e-12	63.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Mtr2g1840		SRF-TF	6.9e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr2g1840	-		-	mtr:MTR_2g049530	389.808