Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1839 ATGAGTTTTGGAAGCAAAGAGAAATTGAAAGGCGTAAGCTTGAGTTCATCGGCTGAAAGCAAGATGAACACCAACAAAGAGACGGAGAAGACACTTGCTCAATATGGTGTAGATGCCGAGCTTCTTGCAGAGTTTGAGCAATCTAGAGTTTATGGCAAATCATTTGAATACTCAAAGACTATTCTTGATCCTCCCAGGTTAGTTTCTGAGGAGAAAATGATTACATATTTGTCTAGAATCCAAAGGGGTGGCTTTATCCAACCCTTTGGTTGTCTGGTAGTAATTGAAGAATCCACATTTAGAATCATAGGTTACAGTGAAAATTGCTTTCAATTGTTAGGTGATATTGGTTCAGAACATTTTATGGGTCTAATTGGTGTTGATGCCACAACACTGTTTACTCCCCCTTCAGGGTCTTCCCTAGTAAAAGCTGTGGCTTCTAGGGAAATTTCACGTTTGAACCCTATTTGGGTCCGTGCAAGGACTACAGAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTTGGGGTTTTGATTGATTTGGAGCCTGCAAGGTCTAGTGGTCCTGCCTTGTCACTCTCGGGGTCATTTCAATCACAGAAGATGGCTGTTAGTGCAATTTCGAGGCTGCAATCTTGTCGTCGGGAAGACATTAGTTTGTTGTGTGATACTGTTGTTGAGGAAGTTCAAAAGCTTACTGGATATGAAAGGGTTATGATTTATAAGTTTCATGAGGATGATCACGGTGAGGTTGTATCTGAGACCAGGAGGTCTGATTTAGAGTCTTATTTGGGGTTGCATTACCCTTCCATAGATATCCCTCAAGCTGCTCGGTTTTTGTTCAAACAAAATCGAGTCAGGTTGATTTATGATTGCCATGCAAAGCCGGTTAAGGTCATTCAGAGTCGTGAACTAAAAAAACCTCTTTGCTTGGTCAACTCAACCCTTAGGTCACCACATGACTGTCACAAACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTTGTGATGGCGGTTGTAATCAATGAAAAGGATACAACCAGGCTTTGGGGTTTACTAGTTTGTCATCACACTTCACCACACCATGTGTCTTTCCCGGTTCGCCATGCTTGTGAGTTTGTAATGCACACTTTTGGAATGCAGCTTTACATGGAGATTCAACTGGCCTCACAAATGGAAGAGAAGCGAATTCTTAAAACACAAACCATGCTGTGTGACATGCTCCTACGCGATGCACCATTTGGTATTGTGACTCAATCCCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTATTATGATGAAAACTGTTGGTTGTTAGGCATAACCCCAACTAAATTACAGGTGAAAGACATAGCAGAATGGTTACTTAGTAATTATAGCGACTCAACAGGTTTGACCACTGAAAGTTTGGTCGACGCTGGTTATCCAGGTGCTACTTTGTTGGGGGATGCAGTTTGTGGCATGGCCTCGGCACGAATCAACCAAAGGCATATCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAATACAATGGGGAGGAGCCAAGCACCATCCAACTGATAAGGATGATGGAGGAAAAATGAACCCAAGAACATCGTTTAAGGCTTTTCTTGAAGTACTTAAAAGTAAAAGTTTGCCTTGGGAAATATCAGAAATCAACGCAATTCACTCATTGCAACTAATCATGCAAGATTTATTCCAAGACACAGACAATACTTGTCCAAAGACTCTAAAAGATTTTGAGAAAAGTGACGCTCTAATCGGAGGGTCGCATGAAATCAGTTCAATAGCACTTGAAATGGTGAGATTAATTGAAACAGCAGCAGTCCCAATATTTGGGGTTGATTCAGACGGCCTGATCAACGGATGGAATGTTAAAATTGCTGAATTGACAGGTCTGCCGACCAGTGAAGCTATGGGAAAATCCCTAGAAAATGAAGTTGTGCATGTGGACTCACGAGAAACTCTGACAAATATTCTGAGAAGAGCTTTGCAAGGTCAAGATAACAAAAATGTTGAGTTGAAAATAAACCGTTTTGTGCTTCATCAAGAAAAGGAAGTTGTATATCTCATGATCAGTTCTTGCATAAGTAGAGACTACACAAATGCTATTGTTGGGGTAGGCTTTGTAGGTCAAGACATCACTTTTGAAAAAGTGATTGTAAAGAAATTCATCAAGTTGGAAGGCGATTACAAAGCTATCATGCATAGTCTTAATCCGCTGATTCCACCAATATTCGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGTAGCCATGGAAAGGGTAACCGGATGGAAAAAAGACGAGGTCATAGGGAAAATGCTTCTTGGTGAAATTTTTGGAAGTTTTTGTCGATTGAAAGGTCAAGATGCACTAACCGATTTTATGATTTTATTGTATCACGGAATAAGTGGCCAAGATTCTGAGAAGTCGCCATTCGGATTTTATGATAGAAATGGAAAGTTTATAGAGACTTATATAACAACAAACAAAAGGACAGATGCAAGTGAAGATATAATCGGTTGTTTCTGCTTCTTGCATGTTGTGACAGAAGATTTGAATCAACCCTTTCAAGGACACAGGTCTAAATGCAGACAAAGGATCTCGAAGTCTAAGGAGTTAGCTTATATACTTCAAGAGATGAAGAATCCTTTAAATGGTATCCGATTCACACACAAACTTTTGGAAAATACAGGCATCTCCGAAAACCAGAAACAACTTCTTGACACTAGCGAAGCTTGTGAAAGACAAATAATGGCGATTATTGAGGATATAGATTTAGGAAGTATTAACGAAGGCACTTGGAAGCTAAACATGAAAGAATTTCTTCTGGGAAATATTTTAGATGCCGTTGTTAGTCAAGTCATGATGCTGATAAAAGGAAAGGATTTACAGATGTTTCACGAAATATCCGACAAAATCCAAACACTTTCTCTTTACGGCGATCAAATTAGACTTCAGATGGTCTTGTCTGACATTTTGCACAATATAGTTAGCCATACACCGTCTCCAAACGGCTGGATAGAAATGAAGATTACACCTGGTTTAAAAATAATACAAGATGGGAATGAGTTTATCCATTTAAAGTTCAGAATGACACATTCTGGTCAAGGACTTCCTTCTTCCATTCTACACGATATGTTTTACGGCGAGAATCAATGGACTACACAGGAAGGTCTAGGGCTATTTATGTCAAGGAAAATCCTTAGTAGGATGAATGGTGATGTCCACTATGTAAGAGAACAAAATAAGTGCTATTTCCTCATTGACCTTGAACTAAGAACAAGAAAAGAAAGACAAAGGAATTTGAAAACAGAGACAAGCATGATAAGAAGTTTGTAA 3369 0.398 MSFGSKEKLKGVSLSSSAESKMNTNKETEKTLAQYGVDAELLAEFEQSRVYGKSFEYSKTILDPPRLVSEEKMITYLSRIQRGGFIQPFGCLVVIEESTFRIIGYSENCFQLLGDIGSEHFMGLIGVDATTLFTPPSGSSLVKAVASREISRLNPIWVRARTTEKPFYAILHRIDVGVLIDLEPARSSGPALSLSGSFQSQKMAVSAISRLQSCRREDISLLCDTVVEEVQKLTGYERVMIYKFHEDDHGEVVSETRRSDLESYLGLHYPSIDIPQAARFLFKQNRVRLIYDCHAKPVKVIQSRELKKPLCLVNSTLRSPHDCHKQYMANMGSIASLVMAVVINEKDTTRLWGLLVCHHTSPHHVSFPVRHACEFVMHTFGMQLYMEIQLASQMEEKRILKTQTMLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDENCWLLGITPTKLQVKDIAEWLLSNYSDSTGLTTESLVDAGYPGATLLGDAVCGMASARINQRHILFWFRSHTAKEIQWGGAKHHPTDKDDGGKMNPRTSFKAFLEVLKSKSLPWEISEINAIHSLQLIMQDLFQDTDNTCPKTLKDFEKSDALIGGSHEISSIALEMVRLIETAAVPIFGVDSDGLINGWNVKIAELTGLPTSEAMGKSLENEVVHVDSRETLTNILRRALQGQDNKNVELKINRFVLHQEKEVVYLMISSCISRDYTNAIVGVGFVGQDITFEKVIVKKFIKLEGDYKAIMHSLNPLIPPIFASDENACCSEWNVAMERVTGWKKDEVIGKMLLGEIFGSFCRLKGQDALTDFMILLYHGISGQDSEKSPFGFYDRNGKFIETYITTNKRTDASEDIIGCFCFLHVVTEDLNQPFQGHRSKCRQRISKSKELAYILQEMKNPLNGIRFTHKLLENTGISENQKQLLDTSEACERQIMAIIEDIDLGSINEGTWKLNMKEFLLGNILDAVVSQVMMLIKGKDLQMFHEISDKIQTLSLYGDQIRLQMVLSDILHNIVSHTPSPNGWIEMKITPGLKIIQDGNEFIHLKFRMTHSGQGLPSSILHDMFYGENQWTTQEGLGLFMSRKILSRMNGDVHYVREQNKCYFLIDLELRTRKERQRNLKTETSMIRSL* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1839 1122 CDD PAS 614 721 IPR000014 -
Mtr2g1839 1122 CDD HATPase_Phy-like 989 1102 IPR044767 -
Mtr2g1839 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 80 187 IPR035965 -
Mtr2g1839 1122 CDD HisKA 878 934 IPR003661 GO:0000155|GO:0007165
Mtr2g1839 1122 SMART gaf_1 218 398 IPR003018 GO:0005515
Mtr2g1839 1122 CDD PAS 748 858 IPR000014 -
Mtr2g1839 1122 ProSiteProfiles Histidine kinase domain profile. 885 1104 IPR005467 -
Mtr2g1839 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Mtr2g1839 1122 TIGRFAM sensory_box: PAS domain S-box protein 610 725 IPR000014 -
Mtr2g1839 1122 SUPERFAMILY GAF domain-like 396 574 - -
Mtr2g1839 1122 SMART pas_2 605 672 IPR000014 -
Mtr2g1839 1122 SMART pas_2 739 806 IPR000014 -
Mtr2g1839 1122 Gene3D PAS domain 79 321 - -
Mtr2g1839 1122 SMART HKATPase_4 990 1104 IPR003594 -
Mtr2g1839 1122 MobiDBLite consensus disorder prediction 9 25 - -
Mtr2g1839 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 609 716 IPR035965 -
Mtr2g1839 1122 Pfam GAF domain 218 388 IPR003018 GO:0005515
Mtr2g1839 1122 MobiDBLite consensus disorder prediction 1 25 - -
Mtr2g1839 1122 Gene3D PAS domain 604 725 - -
Mtr2g1839 1122 ProSiteProfiles PAS repeat profile. 603 674 IPR000014 -
Mtr2g1839 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 751 853 IPR035965 -
Mtr2g1839 1122 Pfam PAS fold 737 857 IPR013767 GO:0006355
Mtr2g1839 1122 Pfam PAS fold 606 721 IPR013767 GO:0006355
Mtr2g1839 1122 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 418 438 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 503 522 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 536 554 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 606 622 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 625 640 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 699 716 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PRINTS Phytochrome signature 719 739 IPR001294 GO:0006355|GO:0009584
Mtr2g1839 1122 PANTHER PHYTOCHROME E 27 1109 - -
Mtr2g1839 1122 SUPERFAMILY GAF domain-like 199 384 - -
Mtr2g1839 1122 PIRSF Phytochrome_conventional 8 1111 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mtr2g1839 1122 Pfam Phytochrome region 401 575 IPR013515 GO:0006355|GO:0009584
Mtr2g1839 1122 Gene3D - 199 549 IPR029016 -
Mtr2g1839 1122 Gene3D - 393 566 IPR043150 -
Mtr2g1839 1122 ProSiteProfiles PAS repeat profile. 737 789 IPR000014 -
Mtr2g1839 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1109 - -
Mtr2g1839 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 378 IPR016132 -
Mtr2g1839 1122 Gene3D PAS domain 750 863 - -
Mtr2g1839 1122 Gene3D - 920 1096 IPR036890 -
Mtr2g1839 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 935 1098 IPR036890 -
Mtr2g1839 1122 Pfam PAS fold 76 185 IPR013654 GO:0006355
Mtr2g1839 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 990 1100 IPR003594 -
Mtr2g1839 1122 SMART HisKA_10 878 942 IPR003661 GO:0000155|GO:0007165
Mtr2g1839 1122 Pfam His Kinase A (phospho-acceptor) domain 878 942 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1839 Mtr-Chr2 21772851 21776921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1839 11 1104 Histidine Kinase Gene Family AT4G18130 57.658 0.0 1347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1839 K12123 - gmx:100808192 1764.97