Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1820 ATGGATTGTTTGGCTACATCACCTGTTCTTTCTAATAAACTTATTCCTTTTCCTACCACTAACTCCAAATTGGGAGCCAGTTTCCAGAAAATATACAGAAGTACAACCAAACAAAAATCACGTCTCTCTTTTTCTAGGGAGAATTGTGAAAGTCGGAGTAATGTTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGCAAACCCAACAAGAACTTCGAACCTGGGAAGACCCAGATATTCGTAGTGACAGCGACGATGAGTATGGTGATGAAGAAGATAAAAGCCTTGGATTTAAAAATGATGGGGAACAGAAAGAGACAGAGACGCAGGACGAGTATGAGGAGCGTATTAAGAAAGAGGTTGAACGACTTTTAAAACCAGAAGAACTAGAAATACTGCAACAGAATATAACTCCTAATTTGGAAAAAATTTCATCTGAAAAATGGAACCCACTGCACTCTCTTGGCTTATCGTTCCAGATTTATAGTATGGACAAGCTTCTTGAAAGTGGTCATGATATTGATTCCATCAATAAGGAAGGTCTCACTGCTCTTCATAAGGCAGTTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTCTACGGAAAGGTGCAAGTCCTCATATCCAGGATAAGGATGGAGCTACTCCACTTCATTATGCAGTTGAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGATGTCAATGTGGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCGTTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTAGCCAATGGCGCAGATAGGTCGACAGAAAATAAGGACGGGAAAACAGCACTGGATATAAGTATATGTTATGGAAAAGACTTCATGTCTTATGACCTTGCTAGATTAATTAAGATAGGTCCAGGCAACTGA 930 0.3892 MDCLATSPVLSNKLIPFPTTNSKLGASFQKIYRSTTKQKSRLSFSRENCESRSNVAIKSSRGVSSLQTQQELRTWEDPDIRSDSDDEYGDEEDKSLGFKNDGEQKETETQDEYEERIKKEVERLLKPEELEILQQNITPNLEKISSEKWNPLHSLGLSFQIYSMDKLLESGHDIDSINKEGLTALHKAVIGKKEAVISHLLRKGASPHIQDKDGATPLHYAVEVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSTENKDGKTALDISICYGKDFMSYDLARLIKIGPGN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1820 309 Pfam Ankyrin repeats (3 copies) 163 244 IPR002110 GO:0005515
Mtr2g1820 309 SMART ANK_2a 180 209 IPR002110 GO:0005515
Mtr2g1820 309 SMART ANK_2a 246 275 IPR002110 GO:0005515
Mtr2g1820 309 SMART ANK_2a 213 242 IPR002110 GO:0005515
Mtr2g1820 309 SMART ANK_2a 147 176 IPR002110 GO:0005515
Mtr2g1820 309 MobiDBLite consensus disorder prediction 55 73 - -
Mtr2g1820 309 PRINTS Ankyrin repeat signature 214 229 IPR002110 GO:0005515
Mtr2g1820 309 PRINTS Ankyrin repeat signature 262 276 IPR002110 GO:0005515
Mtr2g1820 309 SUPERFAMILY Ankyrin repeat 136 291 IPR036770 -
Mtr2g1820 309 ProSiteProfiles Ankyrin repeat profile. 246 278 IPR002110 GO:0005515
Mtr2g1820 309 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Mtr2g1820 309 Gene3D - 218 304 IPR036770 -
Mtr2g1820 309 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 55 304 - -
Mtr2g1820 309 ProSiteProfiles Ankyrin repeat region circular profile. 246 278 - -
Mtr2g1820 309 MobiDBLite consensus disorder prediction 92 114 - -
Mtr2g1820 309 Gene3D - 103 217 IPR036770 -
Mtr2g1820 309 ProSiteProfiles Ankyrin repeat profile. 180 212 IPR002110 GO:0005515
Mtr2g1820 309 Pfam Ankyrin repeats (many copies) 245 286 IPR002110 GO:0005515
Mtr2g1820 309 ProSiteProfiles Ankyrin repeat region circular profile. 180 212 - -
Mtr2g1820 309 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 55 304 - -
Mtr2g1820 309 MobiDBLite consensus disorder prediction 55 114 - -
Mtr2g1820 309 ProSiteProfiles Ankyrin repeat region circular profile. 213 245 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1820 194 286 Ion Channels AT2G25600 39.785 7.20e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1820 - - lja:Lj0g3v0067589.2 410.994