LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr2g1815	ATGGCACCAAAGATTGACTTGATTTCTGATATATCCCCTTCCAAAGAAAATTGGAATATCAGGGTTCGAGTCGTTCGCCTTTGGTTTGTGAGGGATATGAAAAAGGATCAACTTCCTTACTCCTTGGAAATGGTTTTGATGGATAATAAGGGCGACCGAATCAATGCTTCTGTAAGACGTACTCTCATATACAAATATGAGAAGGAGCTGAGGGAGGACCGTGTTTTCTCCATTGGAAATTTTAGTGTTGCCTCTAATGTGGGATCGTATAGGACGGCGAGACACCCTTATAAGATTAACTTTCAGTATGGTACCAAAATAAAACAGTGTGATGATAAGTTTGTTCCTGCTGACATCTACGTGATCGGTGATTCTCGCGAAATCTTTCAATCTGAATATGATACGGATTACTTGATCGATGTTATGGGTATGTTGAAGGCTGTTGGTGTTGAGAAGTCATATACTCGCAATGGATCTCAATCGAAGATGATTCCTATTGAGTTGGATTACGATGGGTTTCGTTTTAAGGTCACCCTGTTTGGTCCTTATGTCGATGAGTTGAATGCTTTTCTTGCATCTGGTGAAACCGAAAACGTTGTTGTTGCTGTCCTCTTAACCAAGATCAAGATCTTTCAAGGTCAGGCGACGATACAAAATACTATTAATGCAACAAAGGTGTTGTTCAATCCAACTTTCACTGCTGCTCTTCTATTGAAGAAGAGGATGGTTGAGAATGATGATTCTCCGTCACCGGGCATTTCTAAAATTACGGAGGCATCTAAGGTTAGCGTTGAGGAGGACTTTCTGAATTTGTCCCCGATGACCACTGTTGAAGGCCTTAAGGATTGTGCCGAGGAGAAATGTTTTGCGGTGTTTGGCACTGTCAATGTTATTGTTGATGATTCGGATTGGTGGTATACATCTTGCGTTGTCTGTAACAAAAAGGTGTACCCTGATGAGAAGATGTACTTTTGTTCGAAGTGCAATAAGCACGTGTTGAATGTGACACCCAGGTACATGATCAAGATGAGGGTTGTTGACCACACTGATTCTGCTACTTTTGTTTTATTTGACCGCGATGCTGCTGAGTTGTTTAAGAAGACTTGTGCTGATATGATTGAATCCTGTGGAATGGGAACTGATGCGTCAGAAGTTCCTAAAGATATCCTTGCTATGGTTGAGAAATCTTACCTGTTCAAAGTCGAGACAAACTTGGGATCTTCGACTATGTACGAGAAGTCCTATCGGGTTAAGAGAGTTACGGCCGATCCTGTGTTGGTAGAAAAGTTTCAGACCAAATATAAAGATTTGATGAAGAATGTCCATGAAGAGGATGTTAATTTGGTTGATGGTGTCGTTGATGGTGGTGCTCTCAAATCATCCGACACTATTGTTCAGGATTTGATGAAAAAACTTGATGAACCGACTGCTGGGAGCGTAGATGGGATAGATGAATCACTTACCGCGAGCGTACATGGGATAGGTTTGGTGCAAGACGTTGCAGTTATGAGTGATGGTGGTGATGTTGATGCTCCAGATAAACGTAATGTTACGGTTTCTAAGCGTCCCATCGATGGTTCTAAGGTCGAGAAAGATGGTTCCTCCAAATCACTCGAGCTGATTAAGCGTATTAAGACCGAGAAGCCTTGA	1650	0.4182	MAPKIDLISDISPSKENWNIRVRVVRLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRRTLIYKYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIKQCDDKFVPADIYVIGDSREIFQSEYDTDYLIDVMGMLKAVGVEKSYTRNGSQSKMIPIELDYDGFRFKVTLFGPYVDELNAFLASGETENVVVAVLLTKIKIFQGQATIQNTINATKVLFNPTFTAALLLKKRMVENDDSPSPGISKITEASKVSVEEDFLNLSPMTTVEGLKDCAEEKCFAVFGTVNVIVDDSDWWYTSCVVCNKKVYPDEKMYFCSKCNKHVLNVTPRYMIKMRVVDHTDSATFVLFDRDAAELFKKTCADMIESCGMGTDASEVPKDILAMVEKSYLFKVETNLGSSTMYEKSYRVKRVTADPVLVEKFQTKYKDLMKNVHEEDVNLVDGVVDGGALKSSDTIVQDLMKKLDEPTAGSVDGIDESLTASVHGIGLVQDVAVMSDGGDVDAPDKRNVTVSKRPIDGSKVEKDGSSKSLELIKRIKTEKP*	550

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr2g1815	549	Gene3D	-	5	113	IPR012340	-
	Mtr2g1815	549	Gene3D	-	124	249	IPR012340	-
	Mtr2g1815	549	Gene3D	-	258	442	IPR012340	-
	Mtr2g1815	549	MobiDBLite	consensus disorder prediction	508	533	-	-
	Mtr2g1815	549	Pfam	Replication factor-A C terminal domain	289	420	IPR013955	-
	Mtr2g1815	549	Pfam	Domain of unknown function DUF223	43	138	IPR003871	-
	Mtr2g1815	549	SUPERFAMILY	Nucleic acid-binding proteins	287	419	IPR012340	-
	Mtr2g1815	549	SUPERFAMILY	Nucleic acid-binding proteins	4	112	IPR012340	-
	Mtr2g1815	549	CDD	RPA1_DBD_B_like	140	242	-	-
	Mtr2g1815	549	PANTHER	REPLICATION FACTOR A 1, RFA1	12	373	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Mtr2g1815	549	SUPERFAMILY	Nucleic acid-binding proteins	132	241	IPR012340	-
	Mtr2g1815	549	CDD	RPA1_DBD_C	289	429	IPR013955	-
	Mtr2g1815	549	CDD	RPA1_DBD_A_like	20	107	-	-
	Mtr2g1815	549	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	12	373	-	-
	Mtr2g1815	549	MobiDBLite	consensus disorder prediction	507	533	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr2g1815	Mtr-Chr2	21374791	21378717	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr2g1815	1	441	Core DNA Replication Machinery Family	AT5G08020	23.160	2.87e-17	83.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr2g1815	-		-	mtr:MTR_2g048560	1078.16