Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1790 ATGCGGAGCCACATTATGTGTACTGGGTGTAGAAACATCTTGCTTTACCCTAGAGGAGCAAGCAATGTTTGCTGTGCAGTGTGCAGCACAATTACCCCTGTTATTCCTGTTCTTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGTTGTAGAACGTTGCTAATGCACGCACGTGGAGCTACTACCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTGCCAGATTCCAATCAAATGAACCATATCCGTTGTGGGAACTGCCGGACAACACTCATGTATCCTCATGGAGCTCCCTCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCGATATGACCAATGGAAGGCCGCCAACTCCTGTACGGACACCTAATGAAACAACCAGCTCCGAAACGTCAAGACCCCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCTATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAATGTTGTCGTGGGCGTTACAACAGAGAAGAAATGA 522 0.4521 MRSHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHARGATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPHGAPSVKCAVCHYITNVDMTNGRPPTPVRTPNETTSSETSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKK* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1790 173 PANTHER LSD1-LIKE PROTEIN 1 171 - -
Mtr2g1790 173 MobiDBLite consensus disorder prediction 119 144 - -
Mtr2g1790 173 Pfam LSD1 zinc finger 49 73 IPR005735 -
Mtr2g1790 173 Pfam LSD1 zinc finger 87 111 IPR005735 -
Mtr2g1790 173 Pfam LSD1 zinc finger 7 31 IPR005735 -
Mtr2g1790 173 PANTHER PROTEIN LSD1 1 171 IPR040319 -
Mtr2g1790 173 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 46 76 IPR005735 -
Mtr2g1790 173 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 84 113 IPR005735 -
Mtr2g1790 173 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 33 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1790 Mtr-Chr2 20803825 20810652 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mtr2g1790 zf-LSD1 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1790 - - mtr:MTR_8g089310 272.322