Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1772 ATGGATGCTGATTTTGAGGGGAAAAATCAGCATTTGTATGAAGCAGTAGTGCCTGAGATGAAGGGTGCTGTTGGTAGGGGGAGTAAGGATTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCGGTGCCGACGGATTGTAGGAATCGTCAATTTTTACCCGAAATACGTGAAAATGTTGATGTTTCGAATAATTTGATTTCTGGGGAAGGTAGTAGAGAGTTGGAGAAGAGGAGGAGGGGTTTTGGTGGTGAAGGGTTGGAGATGAACGATGATTTTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATAATGGATGGGGAGGAAAAGAGTGGTAAAAAGACAAAGATTGCGCCTGTGCCTACTTCAAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAACGCAAAGGACTATCATCGTCGACACAAAGTTTGTGATGTGCATTCTAAGGCTAGTAAGGCACTTGTGGGAAGTGTTATGCAACGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTGCAGGCCATAATAAGAGGAGGAGGAAGACACATCCTGATACTGCTGTAGTTAATGGAGGTTCTCCGAATGAAGAAAGGGGCAGTAGCTATCTGTTGATGAGTCTACTAAGGATATTGTCCAATATGCATTCGAACGGCCCAGATCATACGAGAAACTTGGATGGTCTATCCCATCTAATTGGGAACCTGACAAGTTTAGCTGGTACATTTAACGGAAGAAATATAGCATCCTTATTGGAGGGACCTCAAGAATTAGTAAAAGCCGGTACATCTGGAGCTGCACAGAATGTTCCAAACTCAAATCCGAATGGCGCTGAACCATCAAGACCAGATTCTTCTATTGAAATGACAAACGGTCTGATCCATCAGGACCCTCCAGAGTCTAGGTTACAGTGCGCGACAGTTCCGGCCAATCATTTGACACAAAAATGTATACCTTCAAGCAGTGTTGGAGTAGGATGTTTAAAACCTCCTCTGATACCGCAGTCCTCAAATTTAGTTCCTTCAAGGGGTAGCCTTCCACCTCGACCAGTTGCCACAGAGACTACAGTTGGAAGAAACAGGTTATGTAATATTGACCTGAATAATGTATATGATGATGGACAGGACTATGTTGAGAACCCTGAAAATTCTAATCCACCTTTGGCCTTAGGGGTTGAATCCCGTGATCATTCTTCATTTGTACAATATGAATCTCTCAAGTCAAGTCCACCACAGACGAGTAGAAACTCAGATTCGACTTCTACTCAATCACCATCCAGTTCTAGTGGAGAAGGCCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAATGATATCCCCCATGTTCTTCGATCACAGGTCCTTAGCTGGTTATCCAACAGTCCCACCGAGATAGAGAGCTATATAAGACCAGGCTGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGGATGAGCTATGCTATAATCTGGGGCCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTCTTTGGAGAACAGGATGGATATATACCAGAGTGCAGCACTCTGTAGCTATTTTGTATAATGGTCAGCTGGTCTTAGATGTGCCATCGCGTCTTGGAAGCCCACAGAATTGTCAGATTTTGTGCATTAAACCCCTTGCTGTCTCTGCAAATGAAGACGTAAAATTTACTGTGAAAGGGTTAAGCCTTTTCTTGTCTAGTGCAAGGTTGCTCTGTGCACTTGAAGGGAAGTACCTGGTAGAGGACATGTGTTATGATTTGATTGATGGAGCTGATGCAGCCATTGGACATCATGAGCTTCAAACTCTCAGCTTCTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATAGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCCGAGATATGCAGTCTGGAAACTATCATTGAGGCGGCAGAGACTGCTGATGACATCCAGATCAAAGCCAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTATAAAATTCCGGCTAGGGCCAATGACACCTGTTCAAGATCGTTTCCATTTAAATCGATATACATGGCTTGTCGGCTTCTCTATGGACCATGATTGGTGCGCTGTGATGAAAAAACTCTTGGACACTATCTTTGAAGGTGAAGTTGATACTGGAGAACATATCTCTGCAGAGCTAGCTTTGTTAAACATGGGTCTTCTACACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTATTGTTAAACTTTGTGCCAGTTAAAGCATCAGATGGTGGAGATAGTAAAGAGATGCAAGTCAATAAGGTCCCCGACGGATTCTTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTCGCAGCAAGTATGAATGGCTATGAGACTGTATTGGATGCGTTAACTGATGATCCGGGAATGGTTGGAATTGAGGCATGGAAAAGTGCCAAGGACAATACAGGTTTGACACCCAATGACTATGCATCCCTAAGAGGCCACTACTCCTACATTCAACTTGTGCAGAGGAAAACAAGCAAGAGCAGCCAAACTCAACATGTGCTTGACATCCCAGGCACCCTTGTAGACGGAAACACGATGAAGCAATCAGATGGACATAAGTCATCAAAGGTATTGAGTTTGCATACAGAGAAGATTGCAACAACAGCAATTCCAAATCATTGTGGGATCTGCCAGCAGAAGTTGGCATATGGCAGTGTCGGCGGCATGAGGAGGGCACTTGTTTATAGGCCGGCGATGCTGTCAATGGTCGCCATTGCAGCTGTATGTGTCTGTGTAGCTTTGCTCTTCAAAAGTTCACCAAGAGTTTCCTATGTATTCCAGCCTTTCAGCTGGGAATCATTGGATTATGGTTCAATCTAA 3078 0.4344 MDADFEGKNQHLYEAVVPEMKGAVGRGSKDWDLNDWRWDGDLFTAKQLNSVPTDCRNRQFLPEIRENVDVSNNLISGEGSRELEKRRRGFGGEGLEMNDDFGSLNLNLGGQVYPIMDGEEKSGKKTKIAPVPTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGSVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDTAVVNGGSPNEERGSSYLLMSLLRILSNMHSNGPDHTRNLDGLSHLIGNLTSLAGTFNGRNIASLLEGPQELVKAGTSGAAQNVPNSNPNGAEPSRPDSSIEMTNGLIHQDPPESRLQCATVPANHLTQKCIPSSSVGVGCLKPPLIPQSSNLVPSRGSLPPRPVATETTVGRNRLCNIDLNNVYDDGQDYVENPENSNPPLALGVESRDHSSFVQYESLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDIPHVLRSQVLSWLSNSPTEIESYIRPGCIILTICLRLENSAWDELCYNLGPSLRKLLAASNDSLWRTGWIYTRVQHSVAILYNGQLVLDVPSRLGSPQNCQILCIKPLAVSANEDVKFTVKGLSLFLSSARLLCALEGKYLVEDMCYDLIDGADAAIGHHELQTLSFSCHIPNMTGRGFIEVEDNSLSSCSFPFIVAEQEICSEICSLETIIEAAETADDIQIKAKLMEEKTRAMNFVQEMGWLLHRIRIKFRLGPMTPVQDRFHLNRYTWLVGFSMDHDWCAVMKKLLDTIFEGEVDTGEHISAELALLNMGLLHKAVKRNCRPMVELLLNFVPVKASDGGDSKEMQVNKVPDGFLFRPDTVGPAGLTPLHVAASMNGYETVLDALTDDPGMVGIEAWKSAKDNTGLTPNDYASLRGHYSYIQLVQRKTSKSSQTQHVLDIPGTLVDGNTMKQSDGHKSSKVLSLHTEKIATTAIPNHCGICQQKLAYGSVGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVSYVFQPFSWESLDYGSI* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1772 1025 MobiDBLite consensus disorder prediction 292 322 - -
Mtr2g1772 1025 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 1024 IPR044817 GO:0003677
Mtr2g1772 1025 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 18 1024 - -
Mtr2g1772 1025 SUPERFAMILY SBT domain 137 218 IPR036893 GO:0003677|GO:0005634
Mtr2g1772 1025 Pfam SBP domain 139 212 IPR004333 GO:0003677
Mtr2g1772 1025 Gene3D - 131 200 IPR036893 GO:0003677|GO:0005634
Mtr2g1772 1025 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Mtr2g1772 1025 MobiDBLite consensus disorder prediction 364 383 - -
Mtr2g1772 1025 MobiDBLite consensus disorder prediction 404 464 - -
Mtr2g1772 1025 Gene3D - 767 923 IPR036770 -
Mtr2g1772 1025 MobiDBLite consensus disorder prediction 292 330 - -
Mtr2g1772 1025 SUPERFAMILY Ankyrin repeat 790 906 IPR036770 -
Mtr2g1772 1025 MobiDBLite consensus disorder prediction 428 464 - -
Mtr2g1772 1025 MobiDBLite consensus disorder prediction 203 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1772 Mtr-Chr2 20472287 20480930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1772 22 1024 SBP-box Gene Family AT3G60030 46.116 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr2g1772 SBP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1772 - - gmx:100776125 1547.33