Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1723 ATGAATAAGAATTGTGAACTGTCTGAAGAGAGAAAGAATGCTGGAACAAAACTCAACAACACACGGAAGAGAAAGATGCATGAAATCAAGAAATTAGATGAAAAAGAACGCAGACTCGGAATTTTCAACAAAGCAATAGAGCTATCTATTCTATGCCAATCAAAAACTGCAATCATCGTCAAATCGCCAAACAAGAACAAGTTCTATGCATGTGGCTACCCCTGTGACTCTGTCATTCAACGTTTTCTGACCGGACGTATGATGGTCGAGGATGGGAAAAAGAAGAAAGAAGACGACGACATCGCTAAAACCCTAAGGCTTCAATATGAAGCACTTCAAGAAAAACTTGAAGAAGAGGAGGATAATTTGAAATCTCTCAAAGTCACTGAGTCACAAAAGAGTGATTTTAATGTCCATGATTGGTGGAATAATTCTATTGATGATATGGATTTAGCATCTCTTGAAGACTTCAAAAATTCTTTGGACAGTTTCAAGAATAATTTACGTGCAGCAAGCCAAGCAGAGAAGTCCAATTTGCATCCAAATTTAAACATTGCTACTTAA 564 0.3706 MNKNCELSEERKNAGTKLNNTRKRKMHEIKKLDEKERRLGIFNKAIELSILCQSKTAIIVKSPNKNKFYACGYPCDSVIQRFLTGRMMVEDGKKKKEDDDIAKTLRLQYEALQEKLEEEEDNLKSLKVTESQKSDFNVHDWWNNSIDDMDLASLEDFKNSLDSFKNNLRAASQAEKSNLHPNLNIAT* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1723 187 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 19 182 - -
Mtr2g1723 187 Gene3D - 23 110 IPR036879 GO:0003677|GO:0046983
Mtr2g1723 187 Coils Coil 154 174 - -
Mtr2g1723 187 PANTHER MADS BOX PROTEIN 19 182 - -
Mtr2g1723 187 MobiDBLite consensus disorder prediction 1 21 - -
Mtr2g1723 187 SMART madsneu2 21 74 IPR002100 GO:0003677|GO:0046983
Mtr2g1723 187 Coils Coil 18 38 - -
Mtr2g1723 187 ProSiteProfiles MADS-box domain profile. 36 64 IPR002100 GO:0003677|GO:0046983
Mtr2g1723 187 Coils Coil 102 129 - -
Mtr2g1723 187 MobiDBLite consensus disorder prediction 1 17 - -
Mtr2g1723 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 69 IPR002100 GO:0003677|GO:0046983
Mtr2g1723 187 SUPERFAMILY SRF-like 24 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1723 Mtr-Chr2 19775445 19776008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1723 37 187 Type I MADS-box Gene Family AT5G60440 29.560 1.13e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g1723 SRF-TF 8.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1723 - - mtr:MTR_2g045020 343.199