Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1708 ATGGGAAACACAAATTCCTCACACAACCTTTTCATAACCGTAACCGTTTTCGCCGTTACCGTCACCGTTTTCTTCATTCTCTACTTCATCCTCCGTCGTCGCCGTTTCTCTCCGTCATCCTCCTCCATTTTTAGAGTTTCTCCGGTCACCACGACTTCGTCCACTTCATCTTCCGTCGTTGATTCTCTCCCGATTTTCACCTTCTCATCCATCAAACGCCGTTCCTCCACCGTTGTCTCCGGCGACTGTGCCGTTTGCTTATCAAAGTTCGAGCAAAACGATCTCCTCCGTCTTCTTCCTCTCTGCTGTCACGCATTCCACACGGAATGCATTGACGCTTGGTTATCGTCGAATCAAACCTGTCCGTTATGTCGATCATCCGTATTCGCTTCGGAATCGGAGATTATGAAGATTTTCCGTTCATCCTCCACCTCTTCCGGTAACAACAGCTTTCGTTTAGAGATAGGCAACATCAGCAACCGCCGTGAAGCAACCGCAACTGACAATAACAATAACAATGTCGCCGGAGAAACTGACCAGAGGACTTACTCCGTCGGCGCGTTTGAGTATTTCGTCGACGAGGAAGCTGAGATTCCGGTTGGAAACACTAATCGGAGAATATTTTCCGGTGAAAAAGAGGATGCGGTGGTGCTTGCGGTGGAGGTGGAGACTCCGGTGGCTTCTCAGGCGAGTTTAATCGGTGAAGGTAACTGGTTGAAGGATTACGTTGATGGTTTAACAAGAGTGATGTCGTTTCGAGGTTCTGGAAGATTCTTTACTGGAAGTGGTAGACGAAACGACGTCGTTGCTGGTGTTGGAGATTTTGATGTTGAAGCTAATGGTAATGGATTTGGGGAAGAGATTAGTGAGATGTTTAGGTGGATTTCAGGGGTTTAA 897 0.476 MGNTNSSHNLFITVTVFAVTVTVFFILYFILRRRRFSPSSSSIFRVSPVTTTSSTSSSVVDSLPIFTFSSIKRRSSTVVSGDCAVCLSKFEQNDLLRLLPLCCHAFHTECIDAWLSSNQTCPLCRSSVFASESEIMKIFRSSSTSSGNNSFRLEIGNISNRREATATDNNNNNVAGETDQRTYSVGAFEYFVDEEAEIPVGNTNRRIFSGEKEDAVVLAVEVETPVASQASLIGEGNWLKDYVDGLTRVMSFRGSGRFFTGSGRRNDVVAGVGDFDVEANGNGFGEEISEMFRWISGV* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1708 298 Pfam Ring finger domain 82 125 IPR001841 -
Mtr2g1708 298 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 281 - -
Mtr2g1708 298 SMART ring_2 83 124 IPR001841 -
Mtr2g1708 298 CDD RING-H2_PA-TM-RING 82 125 - -
Mtr2g1708 298 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Mtr2g1708 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 130 IPR013083 -
Mtr2g1708 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 281 - -
Mtr2g1708 298 SUPERFAMILY RING/U-box 59 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1708 Mtr-Chr2 19538582 19539776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1708 10 148 C3H Transcription Factor Family AT1G04360 32.432 9.21e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1708 K10663 - gmx:100804962 278.1