Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1706 ATGAGTGTCAAAACGACAACCACCACAAGAGATTCCGTTGTCGTTCCACCTTCAACGTCGACGACAGAAGTAATCGACGTTGAAACTTTTCAATTCTCTTCACCCATCGCCACCACTACCTCCGACGTCATCAACCTCTCCGATATCGAAGAGGACGACGATGATGACGTCAAAATTCTGAATTTCGTTCCGAAAAACACCTCTTTCGGAAAACGGAGAAGAGTCAAACTCGAAAAAGGTGAATCATCAAAACAAAATTCAAATCCAAACGAAGTGCCGTTTTTCTGTGAAATCTGCACAGAAACGAAAACCACTAAGGAAGCTTTTTTCATCACTGGTTGTAACCATGCTTACTGCTCTGATTGCGTCGTGCTTTACGTTCGTTCAAAAATTGAAGAAAATGTGATCAATGTACGGTGTCCTGAAAGTGGTTGTAGTGGATTATTGGAAGCTGAGGAATGCCGGGCGATTTTACCTGTCGAGGATTTTGATCGATGGGGGAAAGCTTTATGCGAGGCGATGTTTGATGTTAATGAGAAATTTTACTGTCCATTTCCGGATTGTTCTGCGCTTTTGATTAATGATGGGACGGAGGCTGTTCTGCAATCGGAGTGTCCAAATTGTAGGAGATTGTTCTGTGCACAATGTAAGGTCTCGTGGCATGATGGGATCGGGTGTAGCGAATTTCAGAAGCTGAATGCGGATGAGAGAGGGAAGAATGATATTATGTTGATGAAACTTGCTAAGGAAAAGCAGTGGAAAAGGTGTCCGAATTGTAAGTATTATGTTGCTAAGTCCGAGGGTTGCTTGTACATGAAATGCAGGTGTGGAATTGCTTTCTGTTACAACTGTGGAGTCCCTAACAAGAATACCATCCATTATTGCAGCAACTGTAAACACTAA 903 0.4264 MSVKTTTTTRDSVVVPPSTSTTEVIDVETFQFSSPIATTTSDVINLSDIEEDDDDDVKILNFVPKNTSFGKRRRVKLEKGESSKQNSNPNEVPFFCEICTETKTTKEAFFITGCNHAYCSDCVVLYVRSKIEENVINVRCPESGCSGLLEAEECRAILPVEDFDRWGKALCEAMFDVNEKFYCPFPDCSALLINDGTEAVLQSECPNCRRLFCAQCKVSWHDGIGCSEFQKLNADERGKNDIMLMKLAKEKQWKRCPNCKYYVAKSEGCLYMKCRCGIAFCYNCGVPNKNTIHYCSNCKH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1706 300 SMART ring_2 96 143 IPR001841 -
Mtr2g1706 300 SUPERFAMILY RING/U-box 237 299 - -
Mtr2g1706 300 SMART ibrneu5 236 298 IPR002867 -
Mtr2g1706 300 SMART ibrneu5 164 226 IPR002867 -
Mtr2g1706 300 Pfam Zinc finger, C3HC4 type (RING finger) 96 141 IPR018957 GO:0046872
Mtr2g1706 300 ProSiteProfiles TRIAD supradomain profile. 92 300 IPR044066 -
Mtr2g1706 300 ProSiteProfiles Zinc finger RING-type profile. 96 141 IPR001841 -
Mtr2g1706 300 Pfam IBR domain, a half RING-finger domain 179 226 IPR002867 -
Mtr2g1706 300 SUPERFAMILY RING/U-box 93 173 - -
Mtr2g1706 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 275 IPR031127 GO:0004842|GO:0016567
Mtr2g1706 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
Mtr2g1706 300 Gene3D - 224 300 - -
Mtr2g1706 300 ProSitePatterns Zinc finger RING-type signature. 114 123 IPR017907 -
Mtr2g1706 300 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 275 - -
Mtr2g1706 300 SUPERFAMILY RING/U-box 170 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1706 Mtr-Chr2 19514142 19518838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1706 96 287 C3H Transcription Factor Family AT2G19610 30.542 1.33e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1706 K11975 - gmx:100807821 343.969