Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1705 ATGGGTCGTGAAACTCCGAGAAAAAGAGATGGAAGAAGCGGCGATTCCCATTCCCATTCGACGCCAGAGGTAATCGACCTTGAAACTTTTCGCTTCTCCGGCAAGCGACCCATCTCATCCGTCATCAACCTTTCCGATGAAGAAGACGAAGACGTTAAGATCATCAGTTTCATTCCGAAAACTATCCCTTCCACAAAACGTAAAAGAAACAACATTGAAAAAGGAGAGTCTTCAAACTCAAATAACACCCCTTTCGTTTGTGAAATCTGTACTGACACTAAAACAATGAAGGATGCTTTCTACATCAGCGGTTGTTCTCACGTATATTGCTCTGATTGCGTGGCCATGTACATTGGTTCCAAGCTTGAAGAAAACATCGTCAAAATTCAGTGTCCTTTTCCAGGGTGCAAAGGTTCCTTGGAGGCGGATTTTTGCCGTTCTATTCTTCCGGCCAAGGTTTTTGAACGGTGGGGTAAGGCGCTTTGTGAGGCTTTGTTCGATGTTTCGAATAAATTCTATTGTCCATTTCCAGACTGTTCAGCACTTTTGATCGATGATGGAACGGAAGCTGTTAGAAATTCAGAATGCCCTAATTGTAATAGGATGTTTTGTGCACAATGTAAAGTTCCATGGCATGAAGGATTCAAATGCAACAAGGTCGAGAAGCTGAATGCCGATGAGACGAAGAAAGAGGATGTCATGTTGATGCGCCTAGCTAAAAAGAAGAAATGGATGAGATGTCCCAAATGCAGAATTTATGTTGCTAGATCTATGGGCTGCGACCACATGGGTAATTTTCACCTTAAACAAGACACAGCTCAGAGGACTGGGCCCATCCCAAACTCCCAACAACACATATCAATTGCATCTCTGCCTTACACAACATCCCCTAATGGTTCCAGCAAAAGAGAGGTTCCCCCTTCACCTCATAAAGCGAATAGCATTGCATAG 951 0.4353 MGRETPRKRDGRSGDSHSHSTPEVIDLETFRFSGKRPISSVINLSDEEDEDVKIISFIPKTIPSTKRKRNNIEKGESSNSNNTPFVCEICTDTKTMKDAFYISGCSHVYCSDCVAMYIGSKLEENIVKIQCPFPGCKGSLEADFCRSILPAKVFERWGKALCEALFDVSNKFYCPFPDCSALLIDDGTEAVRNSECPNCNRMFCAQCKVPWHEGFKCNKVEKLNADETKKEDVMLMRLAKKKKWMRCPKCRIYVARSMGCDHMGNFHLKQDTAQRTGPIPNSQQHISIASLPYTTSPNGSSKREVPPSPHKANSIA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1705 316 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
Mtr2g1705 316 Pfam Zinc finger, C3HC4 type (RING finger) 87 132 IPR018957 GO:0046872
Mtr2g1705 316 SMART ibrneu5 155 217 IPR002867 -
Mtr2g1705 316 Gene3D - 172 223 - -
Mtr2g1705 316 SUPERFAMILY RING/U-box 82 164 - -
Mtr2g1705 316 MobiDBLite consensus disorder prediction 1 24 - -
Mtr2g1705 316 Pfam IBR domain, a half RING-finger domain 169 217 IPR002867 -
Mtr2g1705 316 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 265 - -
Mtr2g1705 316 ProSiteProfiles TRIAD supradomain profile. 83 294 IPR044066 -
Mtr2g1705 316 MobiDBLite consensus disorder prediction 1 26 - -
Mtr2g1705 316 SUPERFAMILY RING/U-box 230 263 - -
Mtr2g1705 316 ProSiteProfiles Zinc finger RING-type profile. 87 132 IPR001841 -
Mtr2g1705 316 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 265 IPR031127 GO:0004842|GO:0016567
Mtr2g1705 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 168 IPR013083 -
Mtr2g1705 316 MobiDBLite consensus disorder prediction 291 316 - -
Mtr2g1705 316 SUPERFAMILY RING/U-box 160 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1705 Mtr-Chr2 19502139 19503755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1705 23 271 C3H Transcription Factor Family AT2G19610 26.820 7.94e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1705 K11975 - gmx:100803898 292.352