Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1704 ATGGCTCCGGGGTCATCAAGCAGGAGAAGAAACAAAGCTCCGGCAGAAGTAATCGACCTCGAATCATTCCGCTTGTCCGGCAAACGACCAATCTCTGCCGTCATCGACCTTTCTGATGAAGAAGATGACGATATTAAGATCATCAATTTCATTCCAAAAAATACCCCTTATGGAAAGCGTAAAAGAAACAAGTTTGACAAAGGAGAGTCTTCAAATTCAAGTATCACTCCATTCGTTTGCGAAATCTGCACGGACACTAAAACAATGAAGGACGCTATTTACATCAGCGGTTGCTCTCATGCTTATTGCTCGGATTGTGTGGCATCATACATAGGTTCCAAACTTGAAGATAACATCGTTAATATTCGGTGTCCTTTTCCAAAGTGTAAAGGTTCGTTGGAAGCGGAGTTTTGCCGTTTTATTCTGCCTGCCGAGGTTTTTGATCGCTGGGGTCAAGGGTTGTGTGAGGCTATGTTCGATGTTTCAGAAAAGTTCTACTGTCCCTTTGCAGACTGTTCTGCTCTTTTGATCAATGACGGAATCGATACTGTTAAAAACTCAGAATGTCCTAATTGTAATAGGATGTTTTGTGCAAAATGTAAGGTTCCATGGCATGAAGGAATCGAATGCAGCGAGTTTGAGAAGCTGAACGCGGACGAGAGGAAGAAAGAAGATGTTATGTTGATGCGCCTTGCTAAGGATAAGAAGTGGAGGCGATGTCCTAAATGCAGAATTTATGTTGCCAAATCTGAGGGTTGCAACAGCATGTTATGCAGGTTCTCTTTCTAG 789 0.4271 MAPGSSSRRRNKAPAEVIDLESFRLSGKRPISAVIDLSDEEDDDIKIINFIPKNTPYGKRKRNKFDKGESSNSSITPFVCEICTDTKTMKDAIYISGCSHAYCSDCVASYIGSKLEDNIVNIRCPFPKCKGSLEAEFCRFILPAEVFDRWGQGLCEAMFDVSEKFYCPFADCSALLINDGIDTVKNSECPNCNRMFCAKCKVPWHEGIECSEFEKLNADERKKEDVMLMRLAKDKKWRRCPKCRIYVAKSEGCNSMLCRFSF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1704 262 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 259 IPR031127 GO:0004842|GO:0016567
Mtr2g1704 262 Gene3D - 212 262 - -
Mtr2g1704 262 ProSiteProfiles TRIAD supradomain profile. 76 262 IPR044066 -
Mtr2g1704 262 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 259 - -
Mtr2g1704 262 Gene3D - 165 211 - -
Mtr2g1704 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Mtr2g1704 262 SUPERFAMILY RING/U-box 77 159 - -
Mtr2g1704 262 SUPERFAMILY RING/U-box 220 258 - -
Mtr2g1704 262 SMART ibrneu5 148 210 IPR002867 -
Mtr2g1704 262 Pfam IBR domain, a half RING-finger domain 164 210 IPR002867 -
Mtr2g1704 262 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Mtr2g1704 262 Pfam Zinc finger, C3HC4 type (RING finger) 80 125 IPR018957 GO:0046872
Mtr2g1704 262 ProSiteProfiles Zinc finger RING-type profile. 80 128 IPR001841 -
Mtr2g1704 262 SUPERFAMILY RING/U-box 157 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1704 Mtr-Chr2 19460650 19461438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1704 10 260 C3H Transcription Factor Family AT2G19610 27.376 8.21e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1704 K11975 - gmx:100803898 315.079