Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1702 ATGGCTCCGGAGTCAAGAGCAAGAAAGAAAAGAAACATAGCTCCGGCAGAGGTAATGGACTTCAAATCATTCCGCTCGCTCGGTAAACGACCAATCCCCGATGTCATCAATCTCTTCGATGAAGAAGACGAAGGCATTAATATCTTCAACTTCACTCCGAAAAATAACTCATATACAAAGCCTAAAACAAACAACTTAGAAAAAGGAGAGTCTTCAAATTCAAGTATCACTCCATTCGTTTGCGAAATCTGCACGGACACGAAAACAATGAAGGATGCTTTCTACATCAGCGGTTGCTCCCACGCTTATTGCTCCGATTGTGTGGTAAAATACATCAATTCCAAACTTGAAGATAACATTGTCAATATTCAGTGTCCTGTACTAGATTGCGAAGGTTTGTTGGATCCACAGTTTTGCCGTCCCATTCTTTCAGACGAGGTTTATGATCGGTGGGGTCTGCTGTTCTGTGAGGCTTTGTTCAAAGTTTCGAAAAAGTTCTACTGCCCCTTCGCAGACTGTTCTGCTCTTTTGATCAACGACAGAAGGAACCCTGTTAAAAATTCAGAATGTCCTAATTGTAATAGGATGTTTTATGCACAATGTATGGCTCCACAGCATGATGTTTGTGCACGATGTAAGGTTCCACGGCAACAAGGAATTGAATGCAGTGAGTTCGAGAAGCTGAATGTGGACCGGAGGAAGAAAGAAGACGATATGTTCATGTGCTTTGCTAAGGATACAGAATGGAGGCAATGTCCAAAATGCAGAATTTATGTTGCCAAATCGGAGGGCTCCATCGACATGACATGCAGGTTGTCTTTTCTATTCAATATTCTCTTGGTTATATCCTTATTTTTTGAATAA 864 0.4132 MAPESRARKKRNIAPAEVMDFKSFRSLGKRPIPDVINLFDEEDEGINIFNFTPKNNSYTKPKTNNLEKGESSNSSITPFVCEICTDTKTMKDAFYISGCSHAYCSDCVVKYINSKLEDNIVNIQCPVLDCEGLLDPQFCRPILSDEVYDRWGLLFCEALFKVSKKFYCPFADCSALLINDRRNPVKNSECPNCNRMFYAQCMAPQHDVCARCKVPRQQGIECSEFEKLNVDRRKKEDDMFMCFAKDTEWRQCPKCRIYVAKSEGSIDMTCRLSFLFNILLVISLFFE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1702 287 ProSiteProfiles TRIAD supradomain profile. 77 287 IPR044066 -
Mtr2g1702 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 161 IPR013083 -
Mtr2g1702 287 ProSiteProfiles Zinc finger RING-type profile. 81 127 IPR001841 -
Mtr2g1702 287 Gene3D - 219 274 - -
Mtr2g1702 287 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 276 IPR031127 GO:0004842|GO:0016567
Mtr2g1702 287 SUPERFAMILY RING/U-box 234 270 - -
Mtr2g1702 287 SMART ibrneu5 149 212 IPR002867 -
Mtr2g1702 287 Pfam Zinc finger, C3HC4 type (RING finger) 81 126 IPR018957 GO:0046872
Mtr2g1702 287 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 18 276 - -
Mtr2g1702 287 ProSitePatterns Zinc finger RING-type signature. 99 108 IPR017907 -
Mtr2g1702 287 SUPERFAMILY RING/U-box 78 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1702 Mtr-Chr2 19450456 19451319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1702 81 271 C3H Transcription Factor Family AT2G19610 27.979 2.69e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1702 K11975 - gmx:100803898 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1702 2 19450456 19451319 Mtr2g1702 2 19450456 19451319 ECH