Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1701 ATGGTTCTGGACAACATCAAGAAGAAGAGGCGGCGTTCTTCCTTTCATGGCAGACGTCCTACCTTATCGATTTTCCAGCATCCGAAATATCTCTGCTATCATTTACCATTCATATGCAGAAGACGAAAAGGTTTGAATCGAAAAGGAAATAACAATACTGAGAAAGGAGAGTGTGCTTCAAGTTCGAAAGACGAGCTGTTCTTTTGTGAAATCTGCACAGATATGAAAACAATGAAGGATGTTTTTTGCATCAATGGTTGCTCTCACTCGTATTGCTCTGATTGTGTGGCGATGTACATCGGTTCCAAGCTCAAAGATAATATCATCAACATTCGGTGTCCTTTTTCTGGATGCAGTGGTTTGTTGGAATCGGACTATTGCCAGTCGATTCTTCCTGCCGAGGTTTTTGACCGATGGGGGAACGCGTCTTGCGAGGTGTTGATTGATGATTCGGAAAAATTCTACTGTCCCTTTGCAGACTGTTCAGCTCTGTTGATCAATGATGAAACGGAGGCTGTTATGAAAGCAGAATGTCCTTATTGTGAAAGGATGTTCTGTGCACAATGTAAAGTTCCATGGCATGAAGGGATTGAATGCAGTGAGTTCGAGACGCTGAATGCGGACGAGAGGGAGAAAGAGGATGTTATGTTGGTAGGCCTTGCAAAGGATAAGAAGTGGATGCGATGCCCTAATTGCAGAATTTATGTTGCCAAATCTCATGGCTGCAACAGCATGAAATGCAGCATATTGACAGAAGTTTAA 762 0.4278 MVLDNIKKKRRRSSFHGRRPTLSIFQHPKYLCYHLPFICRRRKGLNRKGNNNTEKGECASSSKDELFFCEICTDMKTMKDVFCINGCSHSYCSDCVAMYIGSKLKDNIINIRCPFSGCSGLLESDYCQSILPAEVFDRWGNASCEVLIDDSEKFYCPFADCSALLINDETEAVMKAECPYCERMFCAQCKVPWHEGIECSEFETLNADEREKEDVMLVGLAKDKKWMRCPNCRIYVAKSHGCNSMKCSILTEV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1701 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 148 IPR013083 -
Mtr2g1701 253 SUPERFAMILY RING/U-box 146 203 - -
Mtr2g1701 253 Pfam IBR domain, a half RING-finger domain 147 199 IPR002867 -
Mtr2g1701 253 Gene3D - 154 201 - -
Mtr2g1701 253 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 62 249 - -
Mtr2g1701 253 SUPERFAMILY RING/U-box 63 146 - -
Mtr2g1701 253 SUPERFAMILY RING/U-box 210 248 - -
Mtr2g1701 253 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Mtr2g1701 253 Gene3D - 202 249 - -
Mtr2g1701 253 ProSiteProfiles Zinc finger RING-type profile. 69 114 IPR001841 -
Mtr2g1701 253 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 249 IPR031127 GO:0004842|GO:0016567
Mtr2g1701 253 ProSiteProfiles TRIAD supradomain profile. 65 253 IPR044066 -
Mtr2g1701 253 SMART ibrneu5 137 199 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1701 Mtr-Chr2 19444974 19445846 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1701 69 248 C3H Transcription Factor Family AT2G31770 26.344 1.90e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1701 K11975 - rcu:8259039 281.567