Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1673 ATGGGGACGACGATTAAAACCAAAACCCAAGTGGTGAAAAACAAAGACAAACAGAAAGAAAAAACTACCAACAAAGGAGACAATAACAACAACAACACCAGCAATGTTTTTGCTTCTTGTTCCTTCTCTAGCCTTGGTCTTCACCAAACCTTATGTGACCAACTTCGTGAAAGAATGGGTTTTGAAGGTCCAACGTTAGTTCAAGCTCAAGCTATTCCTGTTGTTCTCTCTGGTCGTCATGCACTGGTTAATGCTGCTACTGGCACGGGGAAGACTATTGCATACCTGGCTCCAATAATTCATCACTTGCAGAGTTATGATAAGAGAATTCAGCGCTCCGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGCGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCACCGGTTTCATTGGATTGTTCCAGGATACATCATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGTATATCAATTCTTATTGCAACTCCCGGGCGCCTTTTAGATCACTTGAAGAACACATCATCATTTGTGTACACAAATTTGCGCTGGATAATTTTTGACGAAGCTGATCGTATTTTGGAATTAGGATTTGGTAAAGAGATACAAGAAATACTAAATCTTTTAGGTTCAATGAAGACAGGGCACGATGACCAAGGGAATGGAGTTCCAAGACCCACTAAATTTCAAAGACAAAACCTGCTTTTATCTGCGACTTTAAATGAGAAAGTAAACCACCTTGCCAAAATTAGCTTAGAGGATCCAGTGATGATTGGTATTGATGATAAAGTACTGGAACCAACGTCAAAAATTAGATTTGATAATTCAGATTGTGATGAAGACAATGAAGGCACGTATTCCAGTAAAATACCAGCAGTTGGAGCTTATAAAGTGCCCGAACAGTTGATTCAGAGATACATGAAGGTGCCTTGTGGATCACGGCTTGCTATACTTCTTTCTATTTTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGATTGTGCTATTCTTTTCAACATGTGATGCGGTGGACTTTCACTATTCATTGTTAACCGAATTCCTTTTCTCAGCGTTTCCGCAAACCGAAGAAGGGAACAGACCAATGTTTCTTGGATGTAAAACTCTTCGGCTACATGGTAATATGGAACAAGAGGACAGGACAACCAGTTTTCAGGCCTTCAAAACTGAGAAATCTGCCCTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCTTAGATTTTCCAAATGTTAGATGCATAATACAATACGATTCTCCCGGAGAAGCTACTGAATATGTGCACAGAGTTGGAAGAACTGCTCGACTTGGTGAAAGAGGAGAGTCGTTGTTATTTCTGCAACCATCTGAAATAGAGTATTTACAAGACTTGGAGAAACATGGTGTCTCGCTAGCAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTGTCTGCGCAGAAGAACAACACAAAGAAATCTGTTTTCATAGACATGCATCCATGGATCATGTGTCTCCAGAAGGCACTTGAATCCTGTATCTCATCCAAGCCCAAAATGGAAGAACTTGCCAAGAGAGCATTTTGCTCTTGGGTCCGAGCATACACAGCGCATCGTGGGGAGCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTAGGGCACGTAGCAAAAAGCTTTGGATTGAAACAAATACCCTCCTTAGTTGGAAAGACTTTCCAAAACCAAACTAAGAAGAGGAAAAGATTCGAGAAGAAAAATGGGTCGTCAAATAAGAGAAAAGTTGCACGACGTGTGACATAA 1833 0.4075 MGTTIKTKTQVVKNKDKQKEKTTNKGDNNNNNTSNVFASCSFSSLGLHQTLCDQLRERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYDKRIQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTSSFVYTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHDDQGNGVPRPTKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKVLEPTSKIRFDNSDCDEDNEGTYSSKIPAVGAYKVPEQLIQRYMKVPCGSRLAILLSILKHLFEREPSQKIVLFFSTCDAVDFHYSLLTEFLFSAFPQTEEGNRPMFLGCKTLRLHGNMEQEDRTTSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPSEIEYLQDLEKHGVSLAEYPLLKVLDSFPLSAQKNNTKKSVFIDMHPWIMCLQKALESCISSKPKMEELAKRAFCSWVRAYTAHRGELKRIFMVKKLHLGHVAKSFGLKQIPSLVGKTFQNQTKKRKRFEKKNGSSNKRKVARRVT* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1673 610 CDD SF2_C_DEAD 312 462 - -
Mtr2g1673 610 SMART DUF4217_3 515 580 IPR025313 -
Mtr2g1673 610 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 196 204 IPR000629 -
Mtr2g1673 610 PANTHER RNA HELICASE 23 605 - -
Mtr2g1673 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 474 IPR027417 -
Mtr2g1673 610 SMART helicmild6 359 453 IPR001650 -
Mtr2g1673 610 MobiDBLite consensus disorder prediction 1 33 - -
Mtr2g1673 610 Pfam Helicase conserved C-terminal domain 330 453 IPR001650 -
Mtr2g1673 610 SMART ultradead3 60 282 IPR014001 -
Mtr2g1673 610 CDD DEADc_DDX31 51 269 - -
Mtr2g1673 610 Pfam DEAD/DEAH box helicase 66 256 IPR011545 GO:0003676|GO:0005524
Mtr2g1673 610 Gene3D - 3 271 IPR027417 -
Mtr2g1673 610 MobiDBLite consensus disorder prediction 586 610 - -
Mtr2g1673 610 Gene3D - 322 605 IPR027417 -
Mtr2g1673 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 268 IPR014001 -
Mtr2g1673 610 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 23 605 - -
Mtr2g1673 610 Pfam Domain of unknown function (DUF4217) 517 577 IPR025313 -
Mtr2g1673 610 MobiDBLite consensus disorder prediction 10 24 - -
Mtr2g1673 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 69 IPR014014 GO:0003724
Mtr2g1673 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 500 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1673 Mtr-Chr2 18988254 18996670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1673 60 484 Eukaryotic Initiation Factors Gene Family AT5G11200 26.606 4.42e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1673 K14806 - gmx:100805157 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1673 2 18988254 18996670 Mtr2g1673 2 18988254 18996670 ECH