Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1672 ATGAAGGCTCCTTCTAATGGTTACTTGGCTAATTCTGGTGAAGGTGAAAGGAAGGCCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCTATACCGCCTGTTGGAAGCCTTGTTGTTTACTTTCCTCAAGGACATAGTGAACAAGTTGCAGCATCTATGCAAAAGGAAGCAGACATCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATCTGCATGCTTCACAATGTTGCCCTGCATGCTGACCCTGAAACCGACGAGGTCTATGCACAGATGACGCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCTTCAGACATGGGTCTCAAACAAAACCAACAACCCTCAGAATTCTTTTGCAAAACTCTAACTGCTAGTGACACTAGCACTCACGGTGGATTTTCAGTGCCTCGTAGAGCTGCTGAGAAAATATTCCCACCTCTGGACTTCTCAATGCAACCGCCAGCTCAGGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGCGTCTTTGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTCTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCACTATCTTCATCGGTAATATCAAGTGACAGCATGCATATCGGGATTCTTGCTGCTGCGGCTCATGCTGCTTCGAATAACAGTCCATTTACTATATTTTATAATCCAAGGACTAGCCCCTGTGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCTCTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACAGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTGGATCCTGTCCGCTGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGACGAATCAACAGCTGGTGAGCGCCCAAGTAGAGTTTCAATTTGGGACATTGAACCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCGTTTTTTAGGCCAAAGTTCCCGAAGCAACCAGGAATGCCAGAAGATGAGTCTGAAATTGAAAATGCATTCAAGAGAGCTATGCCATGGCTTGGAGATGAACTCGGCATGAAGGATACCTCAAGTTCAGTCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGTATGCAGCAGAATAATAATCAGTTTTCCGCTGCTCAATCTGGGCTTTTACCTCCATCCATGCTTTCGTCAAATGCAATGCATGGTAACCTTAACACCGATGACCCATCCAAGATACTGAACTTTCAATCCCCTGCTGCGCTCTCTGCTCCAAGTCTTCAATTTAATAAACCTAATTTACCGAACCAAGTCAATCAATTGCAACAGCCCCCGGCCTCGTGGTCTCAGCAACAGCAACAGCAGCAGAAGATGCAGTCATTGTTGCCAATGCCGTTAAACCAGCTGCAGCAGCAGCAGCAGAGGCAGCAGCAGCTGGCTGGATCACAAAATCTGCCGCAGCCACAGCAACAACAGCCTCAACTAACTCAACAGAGTCCGCAGCAGCCTCAACAGCAGCAACAACACCAACAGCCGTGTCAAAATACGACTATGAATAACGGCACAATTGGTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACCTACTCTCAGCTTCAGCAACAGTTACTCTCAGGAAGTATGCAATCCCAACAAAATTTACAATCAGCTGGCAAGAATGGATTGATGATGACATCCTTACCACAAGACTCGCAATTCCAGCAACAAATAGACCAACAACAAGCTGGTCTCTTACAGCGGCAGCAGCAACAGAATCAGTTGCAGCAATCTTCGTTACAGTTATTGCAACAAAGCATGTTGCAAAGGGGACCACAACAACCACAAATGTCTCAAACTGTGCCGCAAAACATCTCAGACCAACAGCAACAGTTGCAGTTGTTACAGAAGTTGCAACAGCAGCAACAACAACAACAGCAGCAACAACCACTTTCCACATCTTCCCAACTTTTGCAGTCTCAGCTTCTGCCACAACAAAGCCAGCAAATGCCTCAGCAGCCTATGTCCCAGCATCAGCCCCAACAGCTCGGAAACAATGCATTCTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCACCTCTCATGCATCCGCAGCAGCTCCCTGTGAACCATCTCCAGAATACACAAAAATCACCAACGAACACTAGAGCCCCTTCTGCTTTTACAGATGGAGATGCCCCATCATGCTCAACTTCGCCGTCTACTAATAACTGTCAGACATCACCTCCAAACCCTCTGAAAAGAAATCAACCAGACACATTTGGCGGGCCTTCAATGGTTGAAACCACGAATAATCTGATGCAGGAGCTTCAAAGTAAGTCTGATATGCAGAGCAAACATGAATTACACGGCGTTAAAGGACCCGACAAGCAAAAGCACAAAGGTGCAATCAATGATCATATGGAAGCTTCTTCCGGAACATCGTATGGTATTGATCCTGGTAACATCCACCAGAACTTCCCACTTTCTAACTTCTACATGGATGGTGATGTACACTCGCAACAACCAAGAAGTAATATACCATTTGCTTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTATCTAATTATGGCGGTGCTCCTAGAGACATTGAAACCGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGTGTACCAAACATGTCTTTCAAGCCAGGATGCTCAAATGAAATTCCTATTGCCGATACCGGAGTTTTGAATAATGGGCTATGGTCTAACCAAAATCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCAGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGGTATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGTATCGAAGGACAGCTAGAAGATCCTGTAAGGGTTGACTGGAAACTAGTGTATGTGGATCACGAAAACGACATTCTTCTTGTCGGTGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCTGAGGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATAATATTCCAATCACCAATCAAGCTTGTAGTGGATCAGAAAGTGGCAATGCATGGAGAGCACAGTATGATGATAACTCTGCAGCTTCATTTAATCGATAA 3345 0.4419 MKAPSNGYLANSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDTSSSVFPGLSLVQWMSMQQNNNQFSAAQSGLLPPSMLSSNAMHGNLNTDDPSKILNFQSPAALSAPSLQFNKPNLPNQVNQLQQPPASWSQQQQQQQKMQSLLPMPLNQLQQQQQRQQQLAGSQNLPQPQQQQPQLTQQSPQQPQQQQQHQQPCQNTTMNNGTIGSNQIPNQCVQQPVTYSQLQQQLLSGSMQSQQNLQSAGKNGLMMTSLPQDSQFQQQIDQQQAGLLQRQQQQNQLQQSSLQLLQQSMLQRGPQQPQMSQTVPQNISDQQQQLQLLQKLQQQQQQQQQQQPLSTSSQLLQSQLLPQQSQQMPQQPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMHPQQLPVNHLQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSMVETTNNLMQELQSKSDMQSKHELHGVKGPDKQKHKGAINDHMEASSGTSYGIDPGNIHQNFPLSNFYMDGDVHSQQPRSNIPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNEIPIADTGVLNNGLWSNQNQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPVRVDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYNIPITNQACSGSESGNAWRAQYDDNSAASFNR* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1672 1114 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mtr2g1672 1114 Gene3D - 289 360 - -
Mtr2g1672 1114 PANTHER AUXIN RESPONSE FACTOR 19 1 1101 - -
Mtr2g1672 1114 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr2g1672 1114 MobiDBLite consensus disorder prediction 762 817 - -
Mtr2g1672 1114 CDD B3_DNA 125 217 IPR003340 GO:0003677
Mtr2g1672 1114 Pfam AUX/IAA family 983 1072 IPR033389 -
Mtr2g1672 1114 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mtr2g1672 1114 Gene3D - 124 227 IPR015300 -
Mtr2g1672 1114 Coils Coil 673 696 - -
Mtr2g1672 1114 Coils Coil 634 654 - -
Mtr2g1672 1114 Gene3D - 981 1075 - -
Mtr2g1672 1114 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1101 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr2g1672 1114 MobiDBLite consensus disorder prediction 762 805 - -
Mtr2g1672 1114 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Mtr2g1672 1114 SUPERFAMILY CAD & PB1 domains 999 1064 - -
Mtr2g1672 1114 SMART B3_2 126 228 IPR003340 GO:0003677
Mtr2g1672 1114 MobiDBLite consensus disorder prediction 471 575 - -
Mtr2g1672 1114 MobiDBLite consensus disorder prediction 711 730 - -
Mtr2g1672 1114 ProSiteProfiles PB1 domain profile. 986 1070 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1672 Mtr-Chr2 18941453 18948968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1672 1 492 B3 DNA Binding Superfamily AT1G19220 81.136 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr2g1672 AUX_IAA 1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1672 K14486 - gmx:100815277 1538.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4585 4 59926490 59933448 Mtr2g1672 2 18941453 18948968 PCT