Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1667 ATGGTGAAATCAAATGTGGAAAAAACTGCGGTGGAACGAAGTGATTCTTCATTGTATAGAGGAGTAAGGAAGAGGAAATGGGGAAAGTATGTGTCTGAAATCAGACTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCTTACGACTCAGCCGTCAAGGCGGCGCGTGCATTTGATGCGGCTATGTTTTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTTCCTAATGATCCTCCGTACATTGCCGGAGGAAGATCCATGACACATGCTGAGATTAAGACCGCTGCAGCTTCTTTTGCTAATTCGGGTCAACCCGAAAATACTCCGTTTGAAACACCGTCATCATCGGAGGGGACTGCAACAACATTGTTGTCTATGGAGTTGTTGTCTCCTGCTCTATCCGATGTGACGGTTCAGACAGATTGTAACTCCAAGGAAAACGGGTTATTTTCGGACATGTTTTCAGAAACCGGGTCAGGTTACTCTATGTTTCCGGGTTTTGATGATTTTTGTGGCGATTTCTACGTGCCGGAGATGTCAGATTTTGATTATGTAGAAGAGAACATGGATGGGTTGGTAATTCCAGACCTGTTCTTGTGGAATTTCTAA 609 0.4417 MVKSNVEKTAVERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAVKAARAFDAAMFCLRGSGAKFNFPNDPPYIAGGRSMTHAEIKTAAASFANSGQPENTPFETPSSSEGTATTLLSMELLSPALSDVTVQTDCNSKENGLFSDMFSETGSGYSMFPGFDDFCGDFYVPEMSDFDYVEENMDGLVIPDLFLWNF* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1667 202 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Mtr2g1667 202 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Mtr2g1667 202 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Mtr2g1667 202 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Mtr2g1667 202 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Mtr2g1667 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 202 - -
Mtr2g1667 202 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Mtr2g1667 202 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 202 - -
Mtr2g1667 202 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Mtr2g1667 202 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1667 Mtr-Chr2 18838746 18839724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1667 17 202 AP2-EREBP Transcription Factor Family AT1G19210 46.939 1.47e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr2g1667 AP2 4.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1667 - - mtr:MTR_2g043040 317.39