Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1617 ATGTTGAGTGGAAGGAAAGGTCGTGGTTGCCAAAAGATCGAGATGAAAAAGATGAGCAACAAGAGTAACCTTCAAGTGACTTTGTCAAAGCGTCGTAGGGGACTCTTTAAGAAAGTCAATGAGCTTTGCACCCTTTGTGGTGTAGATGTTGCTCTCGTTGTATTCTCACCTAGTGAAAAAGTATTTTCTTTCGGTCATCCAAATGTTGATACGGTTATAGATCGCTATCTCTCTGGGGTCCCACCACAAAACAACAGCACCATGGAATTCATTGAGGCTCACCATAGTGCCAAAGTGTGTGAGCTTAATGCTGAGTTGATTCAAATCAATAACACACTGGACGAGGAGAAAAAGAGTGATGATGAGTTGAGCCTTTTGTGCAAGGCGTTCAAGGCTCAATTTTGGTGGGCTTGTCCAATTGGTGGGATGAATAGGGCTCAACTTGAATTATTCAAGAAGATTTTAGTGGAGCTTAAGAAACTTGTTGCTCAATATGTTCATAGGAGTGCAATTCAGGGTACTTCTTCTCAAACTTTTTCATTTTTTGCTGGTAATGATTTATCCTCTAACATCCCTCTCCATTATCAGCCAAATCCTCAACAAACTGAAATGTTTCCACCACAATTTTTTCATTACCCTATATTGCAATCTCATTTGTTTGGCTTCAACAATATGAGAGAAGGAGGATATGGACCCCCCAGATTCTATTGA 711 0.4037 MLSGRKGRGCQKIEMKKMSNKSNLQVTLSKRRRGLFKKVNELCTLCGVDVALVVFSPSEKVFSFGHPNVDTVIDRYLSGVPPQNNSTMEFIEAHHSAKVCELNAELIQINNTLDEEKKSDDELSLLCKAFKAQFWWACPIGGMNRAQLELFKKILVELKKLVAQYVHRSAIQGTSSQTFSFFAGNDLSSNIPLHYQPNPQQTEMFPPQFFHYPILQSHLFGFNNMREGGYGPPRFY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1617 236 CDD MADS_MEF2_like 7 77 IPR033896 GO:0000977|GO:0045944
Mtr2g1617 236 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Mtr2g1617 236 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr2g1617 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 9 165 - -
Mtr2g1617 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr2g1617 236 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
Mtr2g1617 236 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr2g1617 236 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr2g1617 236 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr2g1617 236 PANTHER MADS BOX PROTEIN 9 165 - -
Mtr2g1617 236 SMART madsneu2 6 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1617 Mtr-Chr2 18197452 18198162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1617 5 163 Type I MADS-box Gene Family AT5G60440 52.469 2.19e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g1617 SRF-TF 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1617 - - mtr:MTR_7g062350 345.895