Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1616 ATGTCGAGCGGAAAGAAAGGCCGGGGTCGCCAAAAGATCGAGATGAAAAAGATGAGTGACGAGAGCAACTTGCAAGTTACTTTCTCAAAGTGCCGTAGCGGGCTCTTCAAGAAAGCCGGTGAGATTTGCACCCTTTGTGGTGCAGATGCTGCTCTTGTTGTATTCTCACCTAGTGGAAAGCTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATATACTGTTATCTTTCCCTCGTCCCACCCCAAAACAATGGCACTATGCAATTCATTGAGGCTAACCGCAATGCCAACGTGCGCGAACTCAATGCTCAGTTGACTCAAATCAATAACATGATGCATGCCGAGAAGAAAATTGGTGATGAGCTGAGCAATTTGCGCAAGGAAATGGGGGCTAAGTTAATACATACTAACAAATTTTTGAAAGCTCGACAAAGGATCAAATTACTTTTTGAACGAAGATATGATGGGCAAAGAAAAAAAATAATAAAAGTTACTTGGCCGTGTGCTTTAATGGTGGCTTTCTGA 528 0.4299 MSSGKKGRGRQKIEMKKMSDESNLQVTFSKCRSGLFKKAGEICTLCGADAALVVFSPSGKLFSFGHPNLDTVIYCYLSLVPPQNNGTMQFIEANRNANVRELNAQLTQINNMMHAEKKIGDELSNLRKEMGAKLIHTNKFLKARQRIKLLFERRYDGQRKKIIKVTWPCALMVAF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1616 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 136 - -
Mtr2g1616 175 PANTHER MADS BOX PROTEIN 8 136 - -
Mtr2g1616 175 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr2g1616 175 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr2g1616 175 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr2g1616 175 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr2g1616 175 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Mtr2g1616 175 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr2g1616 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr2g1616 175 Gene3D - 20 101 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1616 Mtr-Chr2 18193407 18193934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1616 5 132 Type I MADS-box Gene Family AT5G60440 56.923 1.18e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr2g1616 SRF-TF 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1616 - - mtr:MTR_1g106070 190.274