Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1610 ATGGTTGATGTTCTAAGCCCTTTCACAATCCCATCTCCTCCTCCACCACCTTCTTTATCAAACAAAAACAATAGCATACCCATGTTATATTATGGTCTAGTGGTGATGGGAATTGCAGCCATAGTCCTAGCAATATATAACATCATCATTATCAAACGTTGCAATAGGAGGCATAATCAATCACAACCCACAAGGCCAAATCTTATGGTTATTGAAGGATTTGAAAGAAGCTTTGAAAACCAACAAAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGGTAGCAAAAGAACAAGAACATAAGGGTTATGATTATGAATGCTATGTTTGCTTATCGGTTTATGAAGAAGGGGAAGATGTTAGGAAGCTACCAAAGTGTAAACATTGTTTTCATGCTCTTTGTATAGATATGTGGCTTTATTCTCACTTTGATTGCCCAATTTGTAGAACACCTGTTGGCCCTCTTTGTCATAATTTTCAAGAAGAGAATTATCGTGATGGGGTGATTGAATCTGGTGGTAGCATCTCTGTTTGA 540 0.3759 MVDVLSPFTIPSPPPPPSLSNKNNSIPMLYYGLVVMGIAAIVLAIYNIIIIKRCNRRHNQSQPTRPNLMVIEGFERSFENQQRNLLSSFKYKKEVVAKEQEHKGYDYECYVCLSVYEEGEDVRKLPKCKHCFHALCIDMWLYSHFDCPICRTPVGPLCHNFQEENYRDGVIESGGSISV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1610 179 SMART ring_2 109 150 IPR001841 -
Mtr2g1610 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 162 IPR044675 -
Mtr2g1610 179 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 162 - -
Mtr2g1610 179 CDD RING-H2_EL5_like 108 151 - -
Mtr2g1610 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 156 IPR013083 -
Mtr2g1610 179 SUPERFAMILY RING/U-box 95 158 - -
Mtr2g1610 179 Pfam Ring finger domain 108 151 IPR001841 -
Mtr2g1610 179 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1610 Mtr-Chr2 18122962 18123865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1610 17 155 C3H Transcription Factor Family AT1G04360 34.000 1.84e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1610 - - aprc:113852327 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1610 2 18122962 18123865 Mtr2g1610 2 18122962 18123865 ECH