Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1606 ATGTTCCTCTTCGACCCTCCCAGTGACGAAGAAATTGAACACTACAATCCTGAATCAGAAGAAGAGCAAGGTAAATCAGAATCAGAATCAGGAGTAGAAGAGAAAGAAGAAGAGTACAAAGAACCACGAGTTTCAAAGAAGAAAACACAGTCTCCGTGGGATTTCACAAAATACTCGGAATCAGTAGCCGAAGAACATGCTCGCAGGAGTACAACCTCTGTAGACGACAAAATCTATGCCGTTAGACAACGTGCCATGCCCATTGTTGCTTTCCCCGACACCGATGACTACAGTAACTCTGACTCTGAACCTGATAAACAAGAAGATTATAGATCGGAAGAAGATGGAGAAGAGGGTAATGCTGGTGGTGACAACAAGCCCTTTTTTGCTCCTTCTGATGGAACCTCTTTTAGTGCCGATTCATTCTTGCAACTCAATTTGTCTCGCTCTTTACTCCTGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGCGCCATCACAGGATCGGGAAAGACAGCTGCATTTGCGCTACCTACTTTAGAGCGATTGCTGTTCCGTCCAAAAGGTGTGCATGCAATAAGGGTTCTTATTCTTACTCCAACAAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGGAGCTTGCTAAATTTACTGATAATATAAGGTGTTGCCTGATTGTTGGTGGTGTGCCAACGAAGGGGCAAGAGGCTGCCTTGAGATCAAGGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATTGACCATTTGCGCAATTCGATGTCGGTGGATTTGGATGATCTCGCTGTTTTAATCCTTGATGAAGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCGTGTGTCCCAAAAAAAGGCAGACCATGCTGTTTTCTGCAACCATGACCGAGGAGGTTGATGATCTTATTAAACTTTCCCTGTCAAAACCCGTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCATCCTTGACTGAGGAAGTGGTTAGAATAAGAAGAATGCGTGAAGTCAATCATGAAGCAGTTCTCCTTGCAATGTGCACCAAAACTTTTACCTCTAAAGTGATAATTTTCAGTGGAACAAAGCAAGCGGCACATAGGCTGAGGATTATTTTTGGATTATCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGATGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCGACTGATGTGGCTGCTCGTGGCCTTGACATTATCGGTGTTCAAACAGTTATCAATTTTGCATGTCCTCGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGGAGAGCGGGATCTGCTGTCACATTTGTTACTGATAGTGACCGATCACTTCTAAAAGCTATTGCAAAGAGGGCTGGGTCAAAGCTGAAAAGCCGCATTGTTGCAGAACAAGCTATACTCAAGTGGTCTCAAGTAATTGAGCAAATGGAGTATCAAATTTCTGAAGTACTTCAAGAAAAGAGGGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACCAAGGCCGAAAACATGATTGCACATAGGGACGAGATATTCTCCCGCCCCAAAAGAACTTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCAGCTAAAGCAGCAAAAGCATACTTGGATAAGGAAGAGGGTTCTTCTCAGAAGGTGATTAGTGCCGAGCAAGCTGAGGACCTCAAAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATATGCCTAGGAAGAAGCGCAGAAAGCTGGAAGCTGCTAGAGAGATGTTGGAGAACGAGGAGCAGGATGACAAGCCAAAAGATAAGGGGGCAAATAAGAATGATAAGGGTGGAATGGCACTTGTTGATCTTGCATACCGACGTGCAAAAGCAGTAAAGGCCGTCAAGAGAGCACTAGATTCTGGAAAGGTTGTGAAGAAGCCTCAAAAGAAATCTAATAAATCTAATCCTCCGGAAAAGACTTCTTCAAGGACAGAAGAGATGTGGGAGATATTCCAGACTGACATGAACGATAAAAAGCCGAAACAAAGAGGTTCTGGAGTAGGAAAGGTCAAGAAATCGTTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2244 0.4439 MFLFDPPSDEEIEHYNPESEEEQGKSESESGVEEKEEEYKEPRVSKKKTQSPWDFTKYSESVAEEHARRSTTSVDDKIYAVRQRAMPIVAFPDTDDYSNSDSEPDKQEDYRSEEDGEEGNAGGDNKPFFAPSDGTSFSADSFLQLNLSRSLLLACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKGVHAIRVLILTPTRELAVQVHSMIEELAKFTDNIRCCLIVGGVPTKGQEAALRSRPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDDLIKLSLSKPVRLSADPSAKRPASLTEEVVRIRRMREVNHEAVLLAMCTKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLDALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDSDRSLLKAIAKRAGSKLKSRIVAEQAILKWSQVIEQMEYQISEVLQEKREEMILRKAEMEATKAENMIAHRDEIFSRPKRTWFVTEKEKKLSAKAAKAYLDKEEGSSQKVISAEQAEDLKMKEKRKREREKNMPRKKRRKLEAAREMLENEEQDDKPKDKGANKNDKGGMALVDLAYRRAKAVKAVKRALDSGKVVKKPQKKSNKSNPPEKTSSRTEEMWEIFQTDMNDKKPKQRGSGVGKVKKSFKSKSRYKRK* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1606 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 501 IPR027417 -
Mtr2g1606 747 Gene3D - 105 348 IPR027417 -
Mtr2g1606 747 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Mtr2g1606 747 Pfam DEAD/DEAH box helicase 164 335 IPR011545 GO:0003676|GO:0005524
Mtr2g1606 747 MobiDBLite consensus disorder prediction 627 657 - -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 90 130 - -
Mtr2g1606 747 SMART ultradead3 159 361 IPR014001 -
Mtr2g1606 747 PANTHER BNAA01G17110D PROTEIN 45 272 - -
Mtr2g1606 747 PANTHER BNAA01G17110D PROTEIN 297 699 - -
Mtr2g1606 747 Pfam Helicase conserved C-terminal domain 378 481 IPR001650 -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 675 690 - -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 596 663 - -
Mtr2g1606 747 PANTHER RNA HELICASE 297 699 - -
Mtr2g1606 747 PANTHER RNA HELICASE 45 272 - -
Mtr2g1606 747 SMART helicmild6 396 481 IPR001650 -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 729 747 - -
Mtr2g1606 747 Coils Coil 605 625 - -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 703 728 - -
Mtr2g1606 747 CDD SF2_C_DEAD 358 490 - -
Mtr2g1606 747 Coils Coil 534 557 - -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 7 50 - -
Mtr2g1606 747 CDD DEADc_DDX27 151 347 - -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 675 747 - -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 1 73 - -
Mtr2g1606 747 Gene3D - 368 568 IPR027417 -
Mtr2g1606 747 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 292 300 IPR000629 -
Mtr2g1606 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 520 IPR001650 -
Mtr2g1606 747 MobiDBLite consensus disorder prediction 59 73 - -
Mtr2g1606 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 346 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1606 Mtr-Chr2 18070568 18079606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1606 128 498 Eukaryotic Initiation Factors Gene Family AT3G13920 32.620 3.80e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1606 K13181 - gmx:100776684 995.342