Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1601 ATGGAACTTGCTGGTGATGGAACTCCGTTTGACCCACGTACCGTTGAAGCTGTTTTCCGTGACTTCAAGGGCCGTAGAGCTGGCTTGATCAAAGCTCTCACCACTGATGTTGAAGATTTTTACCAGCAGTGTGACCCAGAAAAGGAGAATCTTTCTCTGTATGGATATCCTGGTGAATTGTGGGAAGTTACTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCAGAACCTGCACTGGGCATCAATTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTATCTTTAGTTGCAGTTCACAGTGATACATGGCTTCTCTCTGTGGCTTTCTACTTTGGCGCAAGATTTGGCTTTGATAAAGCCGACAGGAAACGCCTTTTCACTCTGATTAATGATCTGCCAACAATATTTGAGGTTGTGACCGGATCTGCTAAGAAACAAACCAAGGAAAAGCCATCTGTCTCAAGTCACAACAGCATCAAGTCAAAGTCGGGCTCAAAAGCGCGTGGATCTGAACTGGCAAAGTATTCAAAGCCGCCAGCAAAAGAAGATGATGAAGGAGTGGACGACGAAGAGGAGGATCAAGGGGAATGCGCTGCATGCGGTGAAAGCTACGTATCTGCATCAGATGAGTTCTGGATCTGCTGTGACATATGTGAGAAGTGGTATCATGGAAAATGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAGCAGTACAAGTGTCCTGCTTGCAACAATAAGAGAGTCCGGCCTTGA 762 0.4672 MELAGDGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKRLFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSIKSKSGSKARGSELAKYSKPPAKEDDEGVDDEEEDQGECAACGESYVSASDEFWICCDICEKWYHGKCVKITPARAEHIKQYKCPACNNKRVRP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1601 253 CDD PHD_AL_plant 198 249 IPR044104 -
Mtr2g1601 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 252 IPR013083 -
Mtr2g1601 253 MobiDBLite consensus disorder prediction 147 166 - -
Mtr2g1601 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 9 253 - -
Mtr2g1601 253 ProSiteProfiles Zinc finger PHD-type profile. 195 249 IPR019787 -
Mtr2g1601 253 Pfam Alfin 14 142 IPR021998 GO:0006355|GO:0042393
Mtr2g1601 253 SMART PHD_3 197 247 IPR001965 -
Mtr2g1601 253 MobiDBLite consensus disorder prediction 147 190 - -
Mtr2g1601 253 SUPERFAMILY FYVE/PHD zinc finger 187 250 IPR011011 -
Mtr2g1601 253 Pfam PHD-finger 198 248 IPR019787 -
Mtr2g1601 253 ProSitePatterns Zinc finger PHD-type signature. 198 246 IPR019786 -
Mtr2g1601 253 PANTHER CPG BINDING PROTEIN 9 253 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1601 Mtr-Chr2 18000582 18004660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1601 3 252 Alfin-like Transcription Factor Family AT3G42790 68.379 6.94e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mtr2g1601 Alfin 1.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1601 - - rcu:8272513 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1601 2 18000582 18004660 Mtr2g1601 2 18000582 18004660 ECH