Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1558 ATGGAAGGTGTCTTTTCCCTTCCTGTAGCCGTCAGAACGGAATTTATCCATTCTCTAATGCAATCTCTCGGATGCTCTTACATTTGTCTTTGGGCATATGATATCATGTTATCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGATAAATGACCAATTACCAAGTTCTTCTTTGGGGAGTGTAGCACAACAGCTTTTTAATCAGTACAGAATTTTATCATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGTCCCTACTTAGAGCTACAACAATTGGAACTTCTTACACTGTCATCAACAGAAATACAGACACAATTCTACCAGGAAGCAAGGATTAAGACTGTTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGGTTCTTAAATATGTCTCAAGCGGATATTCAAACAGCACTTAGCAGTTTATTTCCCGAAGATTTTTCAAGACAGACACAACAAATTAATCATAATCCACCTTCATCATCTTCATCTTCAATGAGATCATTATCAACAGCAGGTAGTCCTGAATACTCATCTCTCATATTCAACATTCCACCTGGAACTTCTCCACCTCAATTTTCACCTGATCTTACCCAACTTGGAGGAGTAAATATTCCACCAATGAGACCTGTTTCAAACACACTACTACCTCTTCAACTTCAACAATTACCTCAAATCACACCAACACAATTATACCCTACAACACAAATTGAGAATGATGTAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCATCAACATCAACCTCAGCAAAATTATGTGGCACATCCAGAAGCTAGTGCATTTGGAAGGTATAGACATGATAAAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTGCATTCTTTAGAAGCTTGAATTTGATGAGAATGAGAGATCGAAATCAAGCTGCACGACCCTCGAGTAATCAACTTCATCATATGATATCAGAGCGACGAAGACGAGAGAAGCTTAATGAGAATTTTCAAGCACTTAGAGCATTACTTCCTCAAGGAACAAAGAAAGACAAAGCTTCCATACTGATAACAGCAAAGGAGACATTGAGATCTTTGATGGCTGAAATTGACAAACTAAGCAAAAGAAATCAAGAGTTGATGTCACAACAATTACCAGCAGCAAATAAAGAATCTACAAAGACTAAAGAAATTGTCAAATTCTCATCATACGAAAGATTAAACGTTCGAGTTTTGCATGTAACGGGGTCGAGTTCATCAGAAGATGAATCAATGGTAGTGGACTTGCAAGTGAACATGATGGGACAAATTTCTCAAGTTGATGTATTGATTCGATTATTGGAATTCTTAAATCAAGATCAACATGTTAACTTGGTTTCAATGGATGCAACAAATACAAATCATGCACCAGGGAATGATTTACTTCATCAAATAACCTTCAGGCTAAGGATTACTCAGATAAGTGAATGGGACGAGGAAGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATACAGTCCCAAGTGGACCAAAATAAATGA 1587 0.3756 MEGVFSLPVAVRTEFIHSLMQSLGCSYICLWAYDIMLSNRLSFLDGFYNVINDQLPSSSLGSVAQQLFNQYRILSFDVNDDRVPGLAFRNQRPYLELQQLELLTLSSTEIQTQFYQEARIKTVVFMGCNKGEIELGFLNMSQADIQTALSSLFPEDFSRQTQQINHNPPSSSSSSMRSLSTAGSPEYSSLIFNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYPTTQIENDVIMRAIQNVLSTPPSHQHQPQQNYVAHPEASAFGRYRHDKSPNIGSNFRRQSLMKRSFAFFRSLNLMRMRDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNQELMSQQLPAANKESTKTKEIVKFSSYERLNVRVLHVTGSSSSEDESMVVDLQVNMMGQISQVDVLIRLLEFLNQDQHVNLVSMDATNTNHAPGNDLLHQITFRLRITQISEWDEEAFQEAVRRVVADLIQSQVDQNK* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1558 528 SMART finulus 336 385 IPR011598 GO:0046983
Mtr2g1558 528 MobiDBLite consensus disorder prediction 160 182 - -
Mtr2g1558 528 Pfam Helix-loop-helix DNA-binding domain 334 379 IPR011598 GO:0046983
Mtr2g1558 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Mtr2g1558 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 398 IPR036638 GO:0046983
Mtr2g1558 528 CDD bHLH_AtbHLH_like 335 387 IPR045239 -
Mtr2g1558 528 Coils Coil 369 396 - -
Mtr2g1558 528 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 519 IPR044658 -
Mtr2g1558 528 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 519 - -
Mtr2g1558 528 Coils Coil 336 356 - -
Mtr2g1558 528 Gene3D - 329 402 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1558 Mtr-Chr2 17390369 17395588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1558 11 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.185 6.86e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr2g1558 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1558 - - gmx:100807098 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1558 2 17390369 17395588 Mtr2g1558 2 17390369 17395588 ECH